Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0607
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    46   5e-06
SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr 3|...    27   3.3  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    26   5.7  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    25   7.5  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    25   7.5  
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.9  
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy...    25   9.9  

>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 46.0 bits (104), Expect = 5e-06
 Identities = 22/47 (46%), Positives = 33/47 (70%)
 Frame = +3

Query: 114 YHQPNRNMATLKAISIRLKSVKNIQXITQSMKMVSAAKYTRAERDLK 254
           +H  +   ATLK I  RLKS+KNI+ IT+++K V+  K TRA+R ++
Sbjct: 24  FHASSPCEATLKEIEQRLKSIKNIEKITKTIKTVAQTKLTRAQRAME 70



 Score = 29.9 bits (64), Expect = 0.35
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 251 ETARPYGEGAVQFYERAEVTPPEDDPKQLFVAMTSDRGLCG 373
           E +  Y   + + ++ A    PE+  K L VA +SD+GLCG
Sbjct: 70  EASNKYYRVSDEVFKEAGTKAPEEG-KTLMVACSSDKGLCG 109



 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 376 VHTGVSKVIRNRLGEPGA-ENIKVICVGDKSRGILQR 483
           +H+ +S++IR  L +P   EN  +  +G+K R  L R
Sbjct: 111 IHSSISRLIRRELHDPKTFENTSLCILGEKVRTQLLR 147


>SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 340

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -1

Query: 435 VLSTRFAE-TVADHFGYTSVYXPHK-PLSEVIATNNCLGSSSGGVTSALS 292
           V+ T+ A+ T+    G  + Y P++ P  E++ TN    + +GG  +ALS
Sbjct: 254 VVITQGADATIVAKDGKVTTYKPNRVPSEEIVDTNGAGDAFAGGFIAALS 303


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
            3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1385

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 168  KSVKNIQXITQSMKMVSAAKYTRAERDLK 254
            + VKN+Q    S+K +SAA +TR    +K
Sbjct: 958  QQVKNMQLELASLKQISAAFFTRIPLKIK 986


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 129  RNMATLKAISIRLKSVKNIQXITQSMKMVSAAKYTRAERDLKLLVPMV 272
            +N    KAI I  K VKNI   T ++++       RA + L  L  ++
Sbjct: 1071 KNKQPRKAILIEFKGVKNINAETVTLRVKDLTHLHRAYKGLDPLKQII 1118


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -3

Query: 274 FTIGTSSFRSRSARVYLAADTIFMDCVIXWIFFTDLRRMEMAFKVAIF 131
           F + + SF     RVYL +  +  +  + W FFT++      F + +F
Sbjct: 224 FFLNSLSFLKIPFRVYLDSHDLTPNLGLWWYFFTEMFNEFRTFFLFVF 271


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = +1

Query: 562 GHCHSHLRITSLXPGKNHFTTSSKVCGXLRPSPDLP 669
           GH   H   ++  P  NHF  +    G + P+ + P
Sbjct: 244 GHNSPHTNYSASTPSFNHFNAAGHPTGNITPTLNSP 279


>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +3

Query: 192 ITQSMKMVSAAKYTRAERDLKLLVPMVKVQYSSMKGLRLHLLKMTPSNCLL 344
           + QS  +    KYT   +  KL V M +       GL  HLL++ P+ C+L
Sbjct: 300 LRQSPSINGTPKYTGLIQCFKL-VWMEQGIVGLYGGLTAHLLRVVPNACIL 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,976,989
Number of Sequences: 5004
Number of extensions: 61908
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)