Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0607
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821...    38   0.010
07_03_0571 - 19602755-19603831                                         37   0.017
07_03_1146 + 24343283-24344029                                         28   7.8  

>10_05_0025 +
           8215685-8215716,8215859-8215937,8216340-8216412,
           8216712-8216864,8217456-8217569,8217649-8217776,
           8219004-8219099,8219479-8219601,8219694-8219810,
           8219983-8220104,8220439-8220508
          Length = 368

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 16/27 (59%), Positives = 24/27 (88%)
 Frame = +3

Query: 147 KAISIRLKSVKNIQXITQSMKMVSAAK 227
           +A+  R+KSV+NIQ IT++MKMV+A+K
Sbjct: 60  RALRTRMKSVRNIQKITKAMKMVAASK 86



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 311 PPEDDPKQLFVAMTSDRGLCG 373
           P  D  K + VA+TSD+GLCG
Sbjct: 112 PSVDVKKNVIVAITSDKGLCG 132


>07_03_0571 - 19602755-19603831
          Length = 358

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 16/34 (47%), Positives = 26/34 (76%)
 Frame = +3

Query: 141 TLKAISIRLKSVKNIQXITQSMKMVSAAKYTRAE 242
           +L+ +  R+ SV+N Q IT++MK+V+AAK  RA+
Sbjct: 37  SLRELRSRIDSVRNTQKITEAMKLVAAAKVRRAQ 70


>07_03_1146 + 24343283-24344029
          Length = 248

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 388 HQCVXSAQ-TSVRGHSNKQLLGVIFRRCNLSP 296
           H+C+ SA    ++GH ++  L ++FR  N +P
Sbjct: 8   HRCMHSASCVCIKGHLSEDALFLVFRHMNWNP 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,309,385
Number of Sequences: 37544
Number of extensions: 446338
Number of successful extensions: 1037
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)