Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0607
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   1e-09
SB_25063| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_433| Best HMM Match : DUF883 (HMM E-Value=0.75)                     29   2.6  
SB_3148| Best HMM Match : Keratin_B2 (HMM E-Value=0.26)                29   4.5  
SB_36623| Best HMM Match : NACHT (HMM E-Value=0.26)                    28   6.0  
SB_39041| Best HMM Match : rve (HMM E-Value=2.3e-10)                   28   7.9  
SB_35341| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=2.9e-14)         28   7.9  
SB_7532| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.9  
SB_15138| Best HMM Match : CLN3 (HMM E-Value=4.4e-05)                  28   7.9  
SB_5783| Best HMM Match : PIR (HMM E-Value=6.1)                        28   7.9  

>SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 4/137 (2%)
 Frame = +2

Query: 251 ETARPYGEGAVQFYERAEVTPPEDDPKQLFVAMTSDRGLCGXYTLVYPK*SATVSANLVL 430
           ++AR YG+GA   Y++ E+    +DPK L V ++SDRGLCG    ++   +  V A++  
Sbjct: 95  KSARAYGDGATALYDKVEIKQESEDPKHLIVVLSSDRGLCGG---IHSGLAKAVKASIAG 151

Query: 431 RTSR*SVWEINLAVSCKDCTEST-SFSLLMRF---GRLPXTFLDASQLGTAILTSGLRVX 598
             SR +V  ++     K     T   ++LM F   G+ P  F +A+ L   IL +G    
Sbjct: 152 NPSR-NVGIVSFGDKTKQILSRTLGKNMLMSFMDVGKKPPLFCEATFLAQEILDAGF--D 208

Query: 599 FPGKIILQQVPRSVVXY 649
           F    +   V RSVV +
Sbjct: 209 FNTGDMFYNVFRSVVSF 225



 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 25/34 (73%), Positives = 32/34 (94%)
 Frame = +3

Query: 153 ISIRLKSVKNIQXITQSMKMVSAAKYTRAERDLK 254
           +S+RL+SVKNIQ IT+SMKMVSAAK+ RAE++LK
Sbjct: 62  VSLRLRSVKNIQKITKSMKMVSAAKFGRAEKELK 95


>SB_25063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1203

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/60 (33%), Positives = 32/60 (53%)
 Frame = +3

Query: 165 LKSVKNIQXITQSMKMVSAAKYTRAERDLKLLVPMVKVQYSSMKGLRLHLLKMTPSNCLL 344
           LK  +N +  T+  K+VS    T   + +KL + + K Q ++M+G +  L   T SNC L
Sbjct: 202 LKKFENSRMATK--KLVSDDDGTPYRKKMKLSLKVNKEQQNTMEGQKAGLNTQTESNCYL 259


>SB_433| Best HMM Match : DUF883 (HMM E-Value=0.75)
          Length = 386

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
 Frame = -3

Query: 433 SQHQVRRDGCGSLWIHQCVXSAQTSVRGHSNKQLLGVI---FRRCNLSPF--IELYCTFT 269
           +QH++R  G  +++IH  + +A +S++  +  Q+L  I     + N SP   I+L  T T
Sbjct: 295 TQHEIRMKGLEAIFIHCDLLNASSSLKQGAPSQILACIELDKGKINFSPHSPIQLSTTST 354

Query: 268 IGTSSFR 248
              SS R
Sbjct: 355 DYVSSLR 361


>SB_3148| Best HMM Match : Keratin_B2 (HMM E-Value=0.26)
          Length = 147

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -3

Query: 436 CSQHQVRRDGCGSLWIHQCVXSAQTSVRGHSNKQLLGVIFRRCNLSPFIELYCTFT 269
           C QHQ +     S  I+ CV +A TS R     Q   V     N++P ++   T T
Sbjct: 56  CKQHQHQPVCANSTNINPCVQTAPTSTRVCKQHQHQPVCANSTNINPCVQTAPTST 111



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -3

Query: 436 CSQHQVRRDGCGSLWIHQCVXSAQTSVRGHSNKQLLGVIFRRCNLSPFIELYCTFT 269
           C QHQ +     S  I+ CV +A TS R     Q   V     N++P ++   T T
Sbjct: 27  CKQHQHQPVCVNSTNINPCVQTAPTSTRVCKQHQHQPVCANSTNINPCVQTAPTST 82


>SB_36623| Best HMM Match : NACHT (HMM E-Value=0.26)
          Length = 420

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
 Frame = +3

Query: 102 VAVVYHQPNRNMATLKAISIRLKSV-----KNIQXITQSMKMVSAAKYTRAERDLKLLVP 266
           V + +H+  RN        I LK+      ++++   +++  +   +  +  RD KL+  
Sbjct: 178 VKIFFHKRTRNREAYGCSKIDLKTYMYKPFEDLKPENENVFKLLGEQAFKGIRDGKLIFE 237

Query: 267 MVKVQYSSMKGLRLHLLKMTPSNCLLL*PLTEVC 368
            VK+  + +    LH L   PSN L+  P    C
Sbjct: 238 SVKIDAALLNRGLLHSLPEIPSNSLVEPPKQHFC 271


>SB_39041| Best HMM Match : rve (HMM E-Value=2.3e-10)
          Length = 1164

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 248  PETARPYGEGAVQFYERAEVTPPEDDPKQLFVAMTSDRGLCGXY 379
            P  + P G G + F +R +  P +D P ++FVA     G  G Y
Sbjct: 1022 PGRSSPKGNGVLVF-DRPK--PSQDRPNRIFVAFVDSEGYNGSY 1062


>SB_35341| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=2.9e-14)
          Length = 490

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 375 CTHWCIQSDPQPSR 416
           C+ WCIQ  PQP R
Sbjct: 324 CSKWCIQGIPQPER 337


>SB_7532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 296 RAEVTPPEDDPKQLFVAMTSDRGLCG 373
           RA  TPPE   K   + + S  GLCG
Sbjct: 263 RARATPPEVTDKMAILRLPSGLGLCG 288


>SB_15138| Best HMM Match : CLN3 (HMM E-Value=4.4e-05)
          Length = 662

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 9   YFFVDW*ILPINTHKICKMLGRFGPGVGTQVVAVVYHQPNRNMA 140
           YFFV+  +LP+      K +  F  G G  +V  VY+    ++A
Sbjct: 113 YFFVEAGLLPLTAFYSEKTVFAFSGGTGFGLVGTVYYTGKHSLA 156


>SB_5783| Best HMM Match : PIR (HMM E-Value=6.1)
          Length = 215

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 62  NVGTLRTGCRHPSRGGGLP 118
           N+ TL TG R P  GGG+P
Sbjct: 26  NLNTLPTGARQPVPGGGVP 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,117,583
Number of Sequences: 59808
Number of extensions: 501418
Number of successful extensions: 1364
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1363
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)