Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0607
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084158-5|AAO21417.1|  200|Caenorhabditis elegans Hypothetical ...    66   2e-11
AC084158-4|AAK68562.1|  299|Caenorhabditis elegans Hypothetical ...    66   2e-11
AC084158-3|AAL00872.1|  313|Caenorhabditis elegans Hypothetical ...    66   2e-11
AF078787-2|AAC26950.1|  407|Caenorhabditis elegans Hypothetical ...    29   4.0  
AF022973-5|AAC25797.4|  479|Caenorhabditis elegans Acetylcholine...    29   4.0  
Z75543-1|CAA99867.1|  314|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AB259784-1|BAF48662.1|  323|Caenorhabditis elegans ROG-1 protein.      28   6.9  
Z81043-5|CAB02802.2|  278|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>AC084158-5|AAO21417.1|  200|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.18c protein.
          Length = 200

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 33/42 (78%), Positives = 37/42 (88%)
 Frame = +3

Query: 129 RNMATLKAISIRLKSVKNIQXITQSMKMVSAAKYTRAERDLK 254
           R  ATLK ISIRLKSVKNIQ IT+SMKMV+AAKY +AER+LK
Sbjct: 23  RGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELK 64



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 22/49 (44%), Positives = 30/49 (61%)
 Frame = +1

Query: 376 VHTGVSKVIRNRLGEPGAENIKVICVGDKSRGILQRLYGKHII*FANEI 522
           VH+ + K  +N L   G + I+V+ +GDKSR  LQRLY   I+   NEI
Sbjct: 110 VHSSIVKEAKNILNNAGDKEIRVVAIGDKSRAGLQRLYANSILLSGNEI 158



 Score = 37.9 bits (84), Expect = 0.006
 Identities = 32/111 (28%), Positives = 45/111 (40%), Gaps = 4/111 (3%)
 Frame = +2

Query: 257 ARPYGEGAVQFYER----AEVTPPEDDPKQLFVAMTSDRGLCGXYTLVYPK*SATVSANL 424
           AR YG GA  F++      E    ++  KQ+ V +TSDRGLCG       K +  +  N 
Sbjct: 66  ARAYGVGAKTFFDNIDPVVEGVEKQESKKQVLVLITSDRGLCGGVHSSIVKEAKNILNNA 125

Query: 425 VLRTSR*SVWEINLAVSCKDCTESTSFSLLMRFGRLPXTFLDASQLGTAIL 577
             +  R            +    ++        GR P +F DAS    AIL
Sbjct: 126 GDKEIRVVAIGDKSRAGLQRLYANSILLSGNEIGRAPPSFADASIAAKAIL 176


>AC084158-4|AAK68562.1|  299|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.18a protein.
          Length = 299

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 33/42 (78%), Positives = 37/42 (88%)
 Frame = +3

Query: 129 RNMATLKAISIRLKSVKNIQXITQSMKMVSAAKYTRAERDLK 254
           R  ATLK ISIRLKSVKNIQ IT+SMKMV+AAKY +AER+LK
Sbjct: 23  RGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELK 64



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 22/49 (44%), Positives = 30/49 (61%)
 Frame = +1

Query: 376 VHTGVSKVIRNRLGEPGAENIKVICVGDKSRGILQRLYGKHII*FANEI 522
           VH+ + K  +N L   G + I+V+ +GDKSR  LQRLY   I+   NEI
Sbjct: 110 VHSSIVKEAKNILNNAGDKEIRVVAIGDKSRAGLQRLYANSILLSGNEI 158



 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 34/114 (29%), Positives = 47/114 (41%), Gaps = 4/114 (3%)
 Frame = +2

Query: 257 ARPYGEGAVQFYER----AEVTPPEDDPKQLFVAMTSDRGLCGXYTLVYPK*SATVSANL 424
           AR YG GA  F++      E    ++  KQ+ V +TSDRGLCG       K +  +  N 
Sbjct: 66  ARAYGVGAKTFFDNIDPVVEGVEKQESKKQVLVLITSDRGLCGGVHSSIVKEAKNILNNA 125

Query: 425 VLRTSR*SVWEINLAVSCKDCTESTSFSLLMRFGRLPXTFLDASQLGTAILTSG 586
             +  R            +    ++        GR P +F DAS    AIL SG
Sbjct: 126 GDKEIRVVAIGDKSRAGLQRLYANSILLSGNEIGRAPPSFADASIAAKAILDSG 179


>AC084158-3|AAL00872.1|  313|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.18b protein.
          Length = 313

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 33/42 (78%), Positives = 37/42 (88%)
 Frame = +3

Query: 129 RNMATLKAISIRLKSVKNIQXITQSMKMVSAAKYTRAERDLK 254
           R  ATLK ISIRLKSVKNIQ IT+SMKMV+AAKY +AER+LK
Sbjct: 23  RGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELK 64



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 22/49 (44%), Positives = 30/49 (61%)
 Frame = +1

Query: 376 VHTGVSKVIRNRLGEPGAENIKVICVGDKSRGILQRLYGKHII*FANEI 522
           VH+ + K  +N L   G + I+V+ +GDKSR  LQRLY   I+   NEI
Sbjct: 110 VHSSIVKEAKNILNNAGDKEIRVVAIGDKSRAGLQRLYANSILLSGNEI 158



 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 34/114 (29%), Positives = 47/114 (41%), Gaps = 4/114 (3%)
 Frame = +2

Query: 257 ARPYGEGAVQFYER----AEVTPPEDDPKQLFVAMTSDRGLCGXYTLVYPK*SATVSANL 424
           AR YG GA  F++      E    ++  KQ+ V +TSDRGLCG       K +  +  N 
Sbjct: 66  ARAYGVGAKTFFDNIDPVVEGVEKQESKKQVLVLITSDRGLCGGVHSSIVKEAKNILNNA 125

Query: 425 VLRTSR*SVWEINLAVSCKDCTESTSFSLLMRFGRLPXTFLDASQLGTAILTSG 586
             +  R            +    ++        GR P +F DAS    AIL SG
Sbjct: 126 GDKEIRVVAIGDKSRAGLQRLYANSILLSGNEIGRAPPSFADASIAAKAILDSG 179


>AF078787-2|AAC26950.1|  407|Caenorhabditis elegans Hypothetical
           protein T17A3.3 protein.
          Length = 407

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +2

Query: 410 VSANLVLRTSR*SVWEINLAVSCKDCTESTS-FSLLMRF-GRLPXTF 544
           VS +   +T++  V E+N+ VSC D   STS   L++ F G  P TF
Sbjct: 28  VSISFSSKTAKRRVEELNMNVSCIDMYLSTSTIRLVVEFDGTFPLTF 74


>AF022973-5|AAC25797.4|  479|Caenorhabditis elegans Acetylcholine
           receptor protein 15 protein.
          Length = 479

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -3

Query: 334 LLGVIFRRCNLSPFIELYCT-FTIGTSSFRSRSARVYLAADTIFMDCVIXW 185
           LLGV F  CN   FI +  T FT+   SF  R+  V+   D      ++ W
Sbjct: 288 LLGVFFHTCN---FISVLATSFTVYVQSFHFRNQHVHERMDFWMRFILLEW 335


>Z75543-1|CAA99867.1|  314|Caenorhabditis elegans Hypothetical
           protein K01D12.1 protein.
          Length = 314

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 84  PVRSVPTFCKFYGCLSVKFTSRRKN 10
           PV   PTF  FY C+  K  S R N
Sbjct: 52  PVEGTPTFKAFYNCVYPKLASLRGN 76


>AB259784-1|BAF48662.1|  323|Caenorhabditis elegans ROG-1 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 396 FGYTSVYXPHKPLSEVIATNNCLGSSSGGVT 304
           +GY S +  H P     A NN +G   GG T
Sbjct: 277 YGYPSSHHHHLPHDSFHALNNSVGMGGGGAT 307


>Z81043-5|CAB02802.2|  278|Caenorhabditis elegans Hypothetical
           protein C29F3.6 protein.
          Length = 278

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
 Frame = -3

Query: 310 CNLSPFIELYCTFTI-GTSSFRSRSARVYLAADTIFMDCV---IXWIFFTDLRRMEM-AF 146
           C+L   I L+C F+I   S+F++     YL+A+  F D +   +   +F  +  +++  F
Sbjct: 19  CSLGVLINLFCIFSICKLSAFKNSFG--YLSANQAFADALYSSLYLFYFCFMDFLDVFLF 76

Query: 145 KVAIFLFG 122
           +  +F+FG
Sbjct: 77  QENVFIFG 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,796,112
Number of Sequences: 27780
Number of extensions: 363920
Number of successful extensions: 837
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)