Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0607
(672 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast... 39 0.003
At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial... 37 0.011
At1g03190.2 68414.m00297 DNA repair protein / transcription fact... 31 0.53
At1g03190.1 68414.m00296 DNA repair protein / transcription fact... 31 0.53
At5g19130.2 68418.m02277 GPI transamidase component family prote... 28 6.5
At5g19130.1 68418.m02276 GPI transamidase component family prote... 28 6.5
At3g21550.1 68416.m02718 expressed protein contains Pfam profile... 28 6.5
At3g21500.2 68416.m02713 1-deoxy-D-xylulose 5-phosphate synthase... 28 6.5
At3g21500.1 68416.m02712 1-deoxy-D-xylulose 5-phosphate synthase... 28 6.5
At4g33430.1 68417.m04750 brassinosteroid insensitive 1-associate... 27 8.6
>At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast
(ATPC1) identical to SP|Q01908 ATP synthase gamma chain
1, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}
Length = 373
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/35 (51%), Positives = 27/35 (77%)
Frame = +3
Query: 138 ATLKAISIRLKSVKNIQXITQSMKMVSAAKYTRAE 242
A+L+ + R+ SVKN Q IT++MK+V+AAK RA+
Sbjct: 51 ASLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQ 85
>At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial
(ATPC) identical to SP|Q96250 ATP synthase gamma chain,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; contains Pfam profile: PF00231 ATP synthase
Length = 325
Score = 37.1 bits (82), Expect = 0.011
Identities = 18/33 (54%), Positives = 28/33 (84%)
Frame = +3
Query: 129 RNMATLKAISIRLKSVKNIQXITQSMKMVSAAK 227
R+++T + + R+KSVKNIQ IT++MKMV+A+K
Sbjct: 41 RSIST-QVVRNRMKSVKNIQKITKAMKMVAASK 72
>At1g03190.2 68414.m00297 DNA repair protein / transcription factor
protein (UVH6) identical to DNA repair/transcription
factor protein (UVH6) gi:22651569 gb:AY090788
Length = 758
Score = 31.5 bits (68), Expect = 0.53
Identities = 21/68 (30%), Positives = 29/68 (42%)
Frame = +1
Query: 394 KVIRNRLGEPGAENIKVICVGDKSRGILQRLYGKHII*FANEIRTSSXYFLGRKSVGHCH 573
K N L PG ++ + K+RG +H+I FAN I S Y L K G
Sbjct: 163 KAAENALLPPGVYTLEDLRAFGKNRGWCPYFLARHMIQFANVIVYSYQYLLDPKVAGFIS 222
Query: 574 SHLRITSL 597
L+ S+
Sbjct: 223 KELQKESV 230
>At1g03190.1 68414.m00296 DNA repair protein / transcription factor
protein (UVH6) identical to DNA repair/transcription
factor protein (UVH6) gi:22651569 gb:AY090788
Length = 758
Score = 31.5 bits (68), Expect = 0.53
Identities = 21/68 (30%), Positives = 29/68 (42%)
Frame = +1
Query: 394 KVIRNRLGEPGAENIKVICVGDKSRGILQRLYGKHII*FANEIRTSSXYFLGRKSVGHCH 573
K N L PG ++ + K+RG +H+I FAN I S Y L K G
Sbjct: 163 KAAENALLPPGVYTLEDLRAFGKNRGWCPYFLARHMIQFANVIVYSYQYLLDPKVAGFIS 222
Query: 574 SHLRITSL 597
L+ S+
Sbjct: 223 KELQKESV 230
>At5g19130.2 68418.m02277 GPI transamidase component family protein
/ Gaa1-like family protein contains Pfam profile:
PF04114 Gaa1-like, GPI transamidase component
Length = 696
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 491 PYNLCRIPRDLSPTQITLMFSAPGSPRRLRITLDTPVCT 375
PY +C++P SPT ++M+ S L + P C+
Sbjct: 516 PYFICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCS 554
>At5g19130.1 68418.m02276 GPI transamidase component family protein
/ Gaa1-like family protein contains Pfam profile:
PF04114 Gaa1-like, GPI transamidase component
Length = 699
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 491 PYNLCRIPRDLSPTQITLMFSAPGSPRRLRITLDTPVCT 375
PY +C++P SPT ++M+ S L + P C+
Sbjct: 519 PYFICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCS 557
>At3g21550.1 68416.m02718 expressed protein contains Pfam profile
PF05078: Protein of unknown function (DUF679)
Length = 184
Score = 27.9 bits (59), Expect = 6.5
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = -3
Query: 403 GSLWIHQCVXSAQTSVRGHS---NKQLLGVIFRRCNLSPFIELYCTFTIGTSSFRSRSAR 233
G++++ Q + T+ GH NK L GV+ C S C FT T S+R+R
Sbjct: 26 GTVFLFQFLNPVLTN-NGHCLLINKYLTGVLIVICAFS------CCFTCFTDSYRTRDGY 78
Query: 232 VYLAADTI 209
V+ T+
Sbjct: 79 VHYGVATV 86
>At3g21500.2 68416.m02713 1-deoxy-D-xylulose 5-phosphate synthase,
putative / 1-deoxyxylulose-5-phosphate synthase,
putative / DXP-synthase, putative strong similarity to
1-D-deoxyxylulose 5-phosphate synthase [Lycopersicon
esculentum] GI:5059160, DEF (deficient in
photosynthesis) protein [Arabidopsis thaliana]
GI:1399261; ; contains Pfam profiles PF02779:
Transketolase, pyridine binding domain, PF02780:
Transketolase, C-terminal domain
Length = 629
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/70 (24%), Positives = 31/70 (44%)
Frame = -1
Query: 609 FPGXQTRNPEVRMAVPN*LASKKVXGRRPNLISKLNDVLSVQSLQDTARFISHTDHLDVL 430
FP RNP ++ P+ ++S K R S+ + S + I+H H+ L
Sbjct: 8 FPSYINRNPSLKYLKPSSMSSTKYSKVRATTFSEKGEYYSNRPPTPLLDTINHPMHMKNL 67
Query: 429 STRFAETVAD 400
S + + ++D
Sbjct: 68 SIKELKVLSD 77
>At3g21500.1 68416.m02712 1-deoxy-D-xylulose 5-phosphate synthase,
putative / 1-deoxyxylulose-5-phosphate synthase,
putative / DXP-synthase, putative strong similarity to
1-D-deoxyxylulose 5-phosphate synthase [Lycopersicon
esculentum] GI:5059160, DEF (deficient in
photosynthesis) protein [Arabidopsis thaliana]
GI:1399261; ; contains Pfam profiles PF02779:
Transketolase, pyridine binding domain, PF02780:
Transketolase, C-terminal domain
Length = 628
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/70 (24%), Positives = 31/70 (44%)
Frame = -1
Query: 609 FPGXQTRNPEVRMAVPN*LASKKVXGRRPNLISKLNDVLSVQSLQDTARFISHTDHLDVL 430
FP RNP ++ P+ ++S K R S+ + S + I+H H+ L
Sbjct: 8 FPSYINRNPSLKYLKPSSMSSTKYSKVRATTFSEKGEYYSNRPPTPLLDTINHPMHMKNL 67
Query: 429 STRFAETVAD 400
S + + ++D
Sbjct: 68 SIKELKVLSD 77
>At4g33430.1 68417.m04750 brassinosteroid insensitive 1-associated
receptor kinase 1 (BAK1) / somatic embryogenesis
receptor-like kinase 3 (SERK3) identical to SP|Q94F62
BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase
1 precursor (EC 2.7.1.37) (BRI1-associated receptor
kinase 1) (Somatic embryogenesis receptor-like kinase 3)
{Arabidopsis thaliana}; contains Pfam domains PF00560:
Leucine Rich Repeat and PF00069: Protein kinase domain;
identical to cDNA somatic embryogenesis receptor-like
kinase 3 (SERK3) GI:14573458
Length = 615
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 293 ERAEVTPPEDDPKQLFVAMTSDRGLCGXYTLVYPK 397
ER E PP D PK+ +A+ S RGL + PK
Sbjct: 377 ERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPK 411
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,939,192
Number of Sequences: 28952
Number of extensions: 341431
Number of successful extensions: 774
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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