Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0605
(837 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 219 2e-57
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 217 7e-57
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 184 6e-47
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 123 2e-28
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 119 3e-27
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 93 2e-19
SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049) 62 5e-10
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 7e-06
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07) 42 8e-04
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16) 31 1.2
SB_51671| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_42630| Best HMM Match : Ets (HMM E-Value=0) 29 3.5
SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0) 29 3.5
SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_29222| Best HMM Match : dsDNA_bind (HMM E-Value=0.78) 29 4.7
SB_16429| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_29221| Best HMM Match : zf-C3HC4 (HMM E-Value=7.5e-10) 29 4.7
SB_43628| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_9053| Best HMM Match : TIG (HMM E-Value=0) 29 6.2
SB_39986| Best HMM Match : CNH (HMM E-Value=6.99949e-42) 29 6.2
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_45916| Best HMM Match : Cadherin (HMM E-Value=0) 28 8.2
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 219 bits (536), Expect = 2e-57
Identities = 111/170 (65%), Positives = 125/170 (73%)
Frame = +1
Query: 256 AMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEV 435
AMNP NT+FDAKRLIGRKF+D V DM HWPF V+ +G +PKI+V +KGE K+FFPEE+
Sbjct: 60 AMNPENTVFDAKRLIGRKFDDPVVARDMTHWPFHVIREGERPKIQVEFKGEKKSFFPEEI 119
Query: 436 SSMVLTKMKETAEAYLGKTVQNAVTRFPRTSMTLKDKPQKMQVPSLGLNVLRIINEPTAA 615
SSMVLTKMKETAEAYLG V +AV P + + K GLNVLRIINEPTAA
Sbjct: 120 SSMVLTKMKETAEAYLGAKVTDAVVTVPAYFHDSQRQATKDAGTIAGLNVLRIINEPTAA 179
Query: 616 AIAYGLDKKGTGERNVLIFXLGGGTFDVSILPSRMVSFXVKSTAGDNPLG 765
AIAYGLDKK ERNVLI+ LGGGTFDVS+L F VKSTAGD LG
Sbjct: 180 AIAYGLDKKVGVERNVLIYDLGGGTFDVSVLTIEDGIFEVKSTAGDTHLG 229
Score = 121 bits (292), Expect = 6e-28
Identities = 56/58 (96%), Positives = 57/58 (98%)
Frame = +2
Query: 80 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQ 253
MAK PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAF+DTERLIGDAAKNQ
Sbjct: 1 MAKTPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFSDTERLIGDAAKNQ 58
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 217 bits (531), Expect = 7e-57
Identities = 112/171 (65%), Positives = 130/171 (76%), Gaps = 1/171 (0%)
Frame = +1
Query: 256 AMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEV 435
A+NP NTIFDAKRLIGR+++DATVQ+DMK WPF+++SD KPKI+V YKGE KTF EE+
Sbjct: 60 ALNPENTIFDAKRLIGRRYDDATVQSDMKLWPFKIISDNNKPKIQVEYKGERKTFAAEEI 119
Query: 436 SSMVLTKMKETAEAYLGKTVQNAVTRFPRTSMTLKDKPQKMQVPSLGLNVLRIINEPTAA 615
SSMVL KMKETAEAYLG+ V +AV P + + K GLNVLR+INEPTAA
Sbjct: 120 SSMVLGKMKETAEAYLGQKVTSAVITVPAYFNDSQRQATKDAGTIAGLNVLRVINEPTAA 179
Query: 616 AIAYGLDKKGTGERNVLIFXLGGGTFDVSILPSRMVS-FXVKSTAGDNPLG 765
A+AYGLDK +GE+NVLIF LGGGTFDVSIL S F VKSTAGD LG
Sbjct: 180 ALAYGLDKSLSGEKNVLIFDLGGGTFDVSILTIDDGSLFEVKSTAGDTHLG 230
Score = 118 bits (283), Expect = 8e-27
Identities = 53/58 (91%), Positives = 56/58 (96%)
Frame = +2
Query: 80 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQ 253
M KAPA+GIDLGTTYSCVGVFQ+GKVEIIANDQGNRTTPSYV FTDTERL+GDAAKNQ
Sbjct: 1 MGKAPAIGIDLGTTYSCVGVFQNGKVEIIANDQGNRTTPSYVGFTDTERLVGDAAKNQ 58
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 184 bits (449), Expect = 6e-47
Identities = 96/168 (57%), Positives = 117/168 (69%)
Frame = +1
Query: 262 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSS 441
NP NT+FDAKRLIGR ++D +VQ D+K +PF+VV KP ++V K E KTF EE+S+
Sbjct: 760 NPENTVFDAKRLIGRSWDDTSVQNDLKFFPFKVVDKNKKPHVQVKVKDEIKTFAAEEISA 819
Query: 442 MVLTKMKETAEAYLGKTVQNAVTRFPRTSMTLKDKPQKMQVPSLGLNVLRIINEPTAAAI 621
MVLTKMKETAEAYLGK V +AV P + + K GL V+RIINEPTAAAI
Sbjct: 820 MVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGAIAGLTVMRIINEPTAAAI 879
Query: 622 AYGLDKKGTGERNVLIFXLGGGTFDVSILPSRMVSFXVKSTAGDNPLG 765
AYG+DKK GE+N+L+F LGGGTFDVS+L F V +T GD LG
Sbjct: 880 AYGMDKK-EGEKNILVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLG 926
Score = 94.7 bits (225), Expect = 8e-20
Identities = 44/53 (83%), Positives = 49/53 (92%), Gaps = 1/53 (1%)
Frame = +2
Query: 98 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQ 253
+GIDLGTTYSCVGVF++G+VEIIANDQGNR TPSYVAFT+ ERLIGD AKNQ
Sbjct: 704 IGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTEEGERLIGDGAKNQ 756
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 123 bits (297), Expect = 2e-28
Identities = 70/112 (62%), Positives = 76/112 (67%)
Frame = +1
Query: 430 EVSSMVLTKMKETAEAYLGKTVQNAVTRFPRTSMTLKDKPQKMQVPSLGLNVLRIINEPT 609
++SSMVL KMKETAEAYLG V +AV P + + K GLNVLRIINEPT
Sbjct: 211 QISSMVLNKMKETAEAYLGCKVTDAVVTVPAYFNDSQRQATKDAGVISGLNVLRIINEPT 270
Query: 610 AAAIAYGLDKKGTGERNVLIFXLGGGTFDVSILPSRMVSFXVKSTAGDNPLG 765
AAAIAYGLDKK ERNVLIF LGGGTFDVS+L F VKST GD LG
Sbjct: 271 AAAIAYGLDKKVGQERNVLIFDLGGGTFDVSVLSIEDGIFEVKSTHGDTHLG 322
Score = 121 bits (292), Expect = 6e-28
Identities = 56/64 (87%), Positives = 58/64 (90%)
Frame = +2
Query: 80 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQGR 259
M KAPA+GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD ERL+GDAAKNQ
Sbjct: 1 MTKAPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDEERLVGDAAKNQVA 60
Query: 260 *TPT 271
PT
Sbjct: 61 MNPT 64
Score = 113 bits (272), Expect = 2e-25
Identities = 64/113 (56%), Positives = 72/113 (63%), Gaps = 25/113 (22%)
Frame = +1
Query: 256 AMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEV 435
AMNP NTIFDAKRLIGR+F+D V+ DMKHW FEVV++ G+PK+KV YKGE KTFF EEV
Sbjct: 60 AMNPTNTIFDAKRLIGRRFDDPGVKDDMKHWSFEVVNEAGRPKVKVEYKGETKTFFAEEV 119
Query: 436 -------------------------SSMVLTKMKETAEAYLGKTVQNAVTRFP 519
SSMVL KMKETAEAYLG V +AV P
Sbjct: 120 VNEAGRPKVKVEYKGETKTFFAEEISSMVLNKMKETAEAYLGCKVTDAVVTVP 172
Score = 41.9 bits (94), Expect = 6e-04
Identities = 18/18 (100%), Positives = 18/18 (100%)
Frame = +3
Query: 510 TVPAYFNDSQRQATKDAG 563
TVPAYFNDSQRQATKDAG
Sbjct: 170 TVPAYFNDSQRQATKDAG 187
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 119 bits (286), Expect = 3e-27
Identities = 72/171 (42%), Positives = 95/171 (55%), Gaps = 2/171 (1%)
Frame = +1
Query: 259 MNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDG-GKPKIKVAYKGEDKTFFPEEV 435
+NP NTI+DAKR IG+ F + K + F V +D G V KG PEE+
Sbjct: 90 INPKNTIYDAKRFIGKTFTKQELLEIGKLYQFRVTTDKRGNAGFLVGKKGNFTVITPEEI 149
Query: 436 SSMVLTKMKETAEAYLGKTVQNAVTRFPRTSMTLKDKPQKMQVPSL-GLNVLRIINEPTA 612
V+ K++ AE L TV AV P +K + ++ SL G+ VLR+INEPTA
Sbjct: 150 GGYVIKKLRTMAERNLTTTVTKAVMSVP-AEFDIKQRNATVKAASLAGITVLRVINEPTA 208
Query: 613 AAIAYGLDKKGTGERNVLIFXLGGGTFDVSILPSRMVSFXVKSTAGDNPLG 765
AA+AYGL KK G NV++ LGGGT DVS+L + F + AG+N LG
Sbjct: 209 AALAYGLHKK-EGVANVMVVDLGGGTLDVSLLNIQGGMFVTMAMAGNNRLG 258
Score = 61.3 bits (142), Expect = 9e-10
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Frame = +2
Query: 86 KAPAVGIDLGTTYSCVGVFQ--HGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQGR 259
K +GIDLGTTYSCVG +Q G+++I +++ ++ PS VAFTD L+G+ A +Q
Sbjct: 30 KPKIIGIDLGTTYSCVGAYQAISGRIDIFSDENDDKVVPSLVAFTDKGVLVGEKALSQAE 89
Query: 260 *TP 268
P
Sbjct: 90 INP 92
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 93.5 bits (222), Expect = 2e-19
Identities = 60/172 (34%), Positives = 87/172 (50%), Gaps = 4/172 (2%)
Frame = +1
Query: 262 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVS-DGGKPKIKVAYKGEDKTFFPEEVS 438
N NTI KR IGRKF D VQ ++ H P++VV I+V Y G+ + F PE+V
Sbjct: 118 NLKNTISQFKRFIGRKFSDPAVQKEIPHLPYKVVELPNDSIGIQVQYLGKQEVFSPEQVM 177
Query: 439 SMVLTKMKETAEAYLGKTVQNAVTRFPRTSMTLKDKPQKMQVPSLGLNVLRIINEPTAAA 618
+M+ T++K TAE L V + V P + + + GLN LR++N+ TA +
Sbjct: 178 AMLFTRLKTTAEIALKTKVTDCVISVPSYYTDRQRRCMLDASATAGLNCLRLMNDTTAVS 237
Query: 619 IAYGLDKKG---TGERNVLIFXLGGGTFDVSILPSRMVSFXVKSTAGDNPLG 765
+AYG+ K+ RNV+ +G + V I V STA + LG
Sbjct: 238 LAYGIYKQDLPTDKPRNVVFVDIGHSSLQVCITAFLKGQLKVLSTAVEPNLG 289
Score = 49.6 bits (113), Expect = 3e-06
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +2
Query: 98 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQ 253
VG D+G + V + G +E +AN+ +R TPS+V+ D +RLIG + KNQ
Sbjct: 4 VGFDVGNQSCYIAVARGGGIETVANEFSDRCTPSFVSLGDKQRLIGTSGKNQ 55
>SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)
Length = 179
Score = 62.1 bits (144), Expect = 5e-10
Identities = 47/118 (39%), Positives = 62/118 (52%), Gaps = 26/118 (22%)
Frame = +1
Query: 385 IKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVTRFPR-------------- 522
I V GE ++F PE++S++VL ++K AEA+LG+ V+ AV P
Sbjct: 2 IAVEVCGEKRSFAPEQISAVVLEQLKADAEAFLGQAVKRAVITVPAHFNDAQRQATKDAG 61
Query: 523 -------TSMTLKDKPQ---KMQVPSLGLNVLRIINEPTAAAIAYGLDKK--GTGERN 660
S T ++P + + P VLRIINEPTAAAIAYGLDK G ERN
Sbjct: 62 TIAGLDVLSRTASERPPSRFRRRRPHGRSRVLRIINEPTAAAIAYGLDKARGGKAERN 119
Score = 47.6 bits (108), Expect = 1e-05
Identities = 20/24 (83%), Positives = 24/24 (100%)
Frame = +3
Query: 510 TVPAYFNDSQRQATKDAGTISGLE 581
TVPA+FND+QRQATKDAGTI+GL+
Sbjct: 44 TVPAHFNDAQRQATKDAGTIAGLD 67
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 48.4 bits (110), Expect = 7e-06
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Frame = +1
Query: 379 PKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVTRFPRTSMTLKDKPQKM 558
P +K Y+ D TF PEE+ M+L + E + +++ V P + +
Sbjct: 68 PHVK-NYQQSDVTFTPEELMGMILNHSRFIGEQFADHPIKDVVLTVPPFFNQAERRALLR 126
Query: 559 QVPSLGLNVLRIINEPTAAAIAYGLDKK----GTGERNVLIFXLGGGTFDVSIL 708
+GLNVL+I+N TA A+ YGL ++ T E++ + + +G + +I+
Sbjct: 127 AAELVGLNVLQIMNSNTAVALNYGLFQQKSFNDTLEKHFMFYDMGASSTVATIV 180
>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
Length = 592
Score = 41.5 bits (93), Expect = 8e-04
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +2
Query: 149 GKVEIIANDQGNRTTPSYVAFTDTERLI 232
G IIAND G+R TP+ VAF+DTE+LI
Sbjct: 83 GNTTIIANDAGDRVTPAMVAFSDTEKLI 110
>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +1
Query: 661 VLIFXLGGGTFDVSILPSRMVSFXVKSTAGDNPLG 765
+ ++ LGGGTFD+SIL + F VK+T GD LG
Sbjct: 2 IAVYDLGGGTFDISILEIQKGVFEVKATNGDTYLG 36
>SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)
Length = 212
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/25 (60%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +2
Query: 158 EIIANDQGNRTTPSYVAFT-DTERL 229
++I N +G+RTTPS VAFT + ERL
Sbjct: 7 KVIENAEGSRTTPSVVAFTPEGERL 31
>SB_51671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 665
Score = 30.3 bits (65), Expect = 2.0
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +1
Query: 67 LKIQNGKSTRSRN-RSGYHVLLRWCLPAREGGDHRQRPGQQDHSVLCCVHRHRASHRRCR 243
L++ N + ++ + R GY L R C R + +R + H++L R +RC
Sbjct: 225 LRLVNTRDDKTHDKRPGYRKLSRVC-GGRRPNEPYERTARV-HTILSTETETRFCAKRCA 282
Query: 244 QEPGAMNPNNTIFDA 288
M+P NT F+A
Sbjct: 283 GTASGMDPKNTPFNA 297
>SB_42630| Best HMM Match : Ets (HMM E-Value=0)
Length = 631
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3
Query: 108 IWVPRTLALVSSSTGRWRSSPTTRATGPLRLMLRSQTPSVSSEMP-PRTRGDEP 266
IW P+ L++S R+S + PLR L P VSS +P P + G+ P
Sbjct: 42 IWPPKKQHLMASYPSTSRASASRSHLFPLRTGLPPVPPLVSSPLPSPTSPGELP 95
>SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 1488
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 423 PRGSQFHGAYENEGNCRSLSWQNCAECSYTVPAYFN 530
PRG Q Y G+C S+S +NC + S+ V +N
Sbjct: 1142 PRGKQI--PYGTAGDCYSVSQENCRKGSFKVTYQYN 1175
>SB_34715| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 977
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3
Query: 108 IWVPRTLALVSSSTGRWRSSPTTRATGPLRLMLRSQTPSVSSEMP-PRTRGDEP 266
IW P+ L++S R+S + PLR L P VSS +P P + G+ P
Sbjct: 388 IWPPKKQHLMASYPSTSRASASRSHLFPLRTGLPPVPPLVSSPLPSPTSPGELP 441
>SB_29222| Best HMM Match : dsDNA_bind (HMM E-Value=0.78)
Length = 355
Score = 29.1 bits (62), Expect = 4.7
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +3
Query: 207 RSQTPSVSSEMPPRTRGDEPQQHNIRCQTS 296
+ Q P++ P+++ + P QHN RC+++
Sbjct: 75 KKQLPTLMKWFSPKSKDETPTQHNQRCESN 104
>SB_16429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 420
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -2
Query: 785 IVKSLXLPSGLSPAVDFTSKDTILDG 708
+++SL LP L P + FTS +I+DG
Sbjct: 342 VLQSLQLPFALLPVLHFTSDKSIMDG 367
>SB_29221| Best HMM Match : zf-C3HC4 (HMM E-Value=7.5e-10)
Length = 337
Score = 29.1 bits (62), Expect = 4.7
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +3
Query: 207 RSQTPSVSSEMPPRTRGDEPQQHNIRCQTS 296
+ Q P++ P+++ + P QHN RC+++
Sbjct: 221 KKQLPTLMKWFSPKSKDETPTQHNQRCESN 250
>SB_43628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 280
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = -2
Query: 533 VIEVRGNRVTAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLI 384
VI + GN +T + + R V +FV ++ L+ G VLS P+ T++
Sbjct: 36 VIVLFGNSLTLYIVLSNRRLRTVPNLFVVSLALSDLGMGVLSMPMCITVL 85
>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
Length = 2990
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 26 HVC*VVLRTSNKTD*KYKMAKAPAVGIDL 112
HVC +V T K K ++K PA GI+L
Sbjct: 1200 HVCNIVSNTETKITCKLDVSKTPAPGIEL 1228
>SB_39986| Best HMM Match : CNH (HMM E-Value=6.99949e-42)
Length = 952
Score = 28.7 bits (61), Expect = 6.2
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Frame = -1
Query: 522 TREPCNCILHSFAKISF--GSF--LHFRKHHGTDFLGEKGFVFTLICYLDLRFASITDNL 355
T EPCNCI + + + G F L R+H T+FL K Y + +I
Sbjct: 704 TCEPCNCIHFTSHSVVYGIGKFYSLDLRQHTVTEFLDPKDTSLAFAVYGAAQL-NIFPIA 762
Query: 354 ERPVLHVGLHSSIFELTSDETFGI 283
V G HS F L +E FG+
Sbjct: 763 VLDVTSPGAHSEEFLLCFNE-FGV 785
>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 28.7 bits (61), Expect = 6.2
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = -2
Query: 473 SAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKGQCFMSACTVASSNLRPMR 294
S F+F ST + +S +KV+ SPL + + P+ G S C V NL
Sbjct: 1108 SPAKFVFTSTGIVRASTRKVVPSPLRRSKVPPTVPAQRLFNGDRVESICNV--QNLSRCP 1165
Query: 293 RLASNIVL 270
++++ VL
Sbjct: 1166 KISNATVL 1173
>SB_45916| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1774
Score = 28.3 bits (60), Expect = 8.2
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = -1
Query: 669 DKYISFSSTLFVKTVSNRSSSRFIDDSENVQAQRWYLHLLWLVFESH*STRE 514
+K ISF +LF+ VSN S+ R+I +E+ + VF+S + RE
Sbjct: 752 NKVISFGPSLFMDKVSNASAGRYICIAESAGVSVASQPAVLEVFDSKPAFRE 803
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,654,232
Number of Sequences: 59808
Number of extensions: 651258
Number of successful extensions: 1960
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1938
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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