Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0605
         (837 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.65 
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   3.5  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   8.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 547 PQKMQVPSLGLNVLRIINEPTAAAIAYGLDKKGTGERNVLI 669
           P    +PS+   + R I++ +A ++A GL  +GT  R V +
Sbjct: 440 PTMPTMPSMAGPIRRRISDKSALSLAGGLYDEGTVRRRVAV 480


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 726 RYHPRW*DGHVESTAAEXKDKY 661
           R HP W D  VE  A    +KY
Sbjct: 171 REHPFWDDQRVEQEAKRRFEKY 192


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = +3

Query: 480 SWQNCAECSYTVPAY---FNDSQRQATKDAGTISGLE 581
           SW N  +CS  V AY    +   R    D+G I+ ++
Sbjct: 115 SWANYKDCSGIVSAYKIAIDKFDRLWVLDSGLINNIQ 151


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,105
Number of Sequences: 438
Number of extensions: 5559
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)