Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0604
         (826 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    24   1.3  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    24   1.7  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   2.9  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   9.0  

>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 675 VXWSCRSGCCSRPIYRCVFCFTFISDVVV 589
           + WSC S  C R +      +T I +V++
Sbjct: 256 ILWSCTSTNCPRFLIMLALSYTVIQEVML 284


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 296 DSKNFDYIPINFDSIDDINSGLLTSNVNF 382
           + K   YIP   ++++D+ +  +T+ VNF
Sbjct: 110 EKKREFYIPPEVENVEDLFTSGITTGVNF 138


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -2

Query: 663 CRSGCCSRPIYRCVFCFTFISDVVVCV 583
           C+ G C+  I     C TF +  + CV
Sbjct: 140 CKKGVCTMEINSDTMCVTFSNLGIQCV 166


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -1

Query: 196 PELTITYSSPGRGFVISSTSADAHWDVHTS 107
           P  T++ ++   G    S +++A WDVH++
Sbjct: 166 PFNTMSGATHHGGIKSDSVTSNAWWDVHST 195


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,303
Number of Sequences: 336
Number of extensions: 3236
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22621642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)