Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0604
         (826 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0627 - 19061106-19061474,19062067-19062909,19063395-190635...    29   4.5  
02_04_0125 - 19982330-19982538,19983507-19983633,19983978-199840...    29   5.9  
06_03_1108 - 27661916-27662812,27662889-27663529,27663613-276645...    28   7.8  

>09_04_0627 -
           19061106-19061474,19062067-19062909,19063395-19063501,
           19064301-19064332,19064384-19064663,19065092-19065475,
           19066730-19066803,19067244-19067310,19067415-19067486,
           19067941-19068000,19068683-19068734,19068874-19068943,
           19069110-19069372
          Length = 890

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +2

Query: 74  HDRVARRRPMFTGVHVPMGVR*CGTDHKTTTGRRICYCQFGSTARSSQG 220
           H R  RR P   G+ +P+G+  C  D      RR CY  F   A +S G
Sbjct: 375 HPRAKRRSPTPPGL-IPVGLPTCNPDLIEVEDRRCCYHGFAG-ADASHG 421


>02_04_0125 -
           19982330-19982538,19983507-19983633,19983978-19984053,
           19984993-19985184,19985906-19986474
          Length = 390

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +1

Query: 184 LSVRVNSPLQSRHPLNMXTKYLIRQTKTVAHYRSTRNGQQKL 309
           L+VRV S  Q R+ L+M  K L RQ  ++   +  ++GQ ++
Sbjct: 285 LAVRVASLFQLRNALSMENKQLRRQITSLQQAKLIKDGQTQM 326


>06_03_1108 -
           27661916-27662812,27662889-27663529,27663613-27664592,
           27664854-27664934,27668582-27668634,27669294-27669308,
           27670069-27670296
          Length = 964

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 196 PELTITYSSPGRGFVISSTSADAHWDVHTSKHRAT 92
           P+  +  + PG G V+S+ ++D  + +HTS  R T
Sbjct: 157 PDSFLAATRPGGGRVLSTATSDLTFAIHTSPFRFT 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,664,122
Number of Sequences: 37544
Number of extensions: 342425
Number of successful extensions: 780
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)