Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0604
         (826 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   1.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   4.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   7.9  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   7.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.9  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   7.9  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 260 QKPLLTTVAPATDSKNFDYIPINFD 334
           + P++  V  ATD+ NFD  P + D
Sbjct: 640 EPPIMPRVQNATDTTNFDEYPPDSD 664


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +1

Query: 145 N*SQNHDRAKNMLLSVRVNSPLQSRHPLNMXTKYLIRQTKTVAHY 279
           N +QN D AKN ++  R N    +     +  + L R  K+  +Y
Sbjct: 416 NIAQNIDHAKNTIIDYRNNDLSINEEKRTIENEQLNRMYKSYPNY 460


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 508 GXNKDKDSTTSEPLVHNSHD 567
           G N+D+D T  +P+V  S+D
Sbjct: 433 GSNEDEDETPLDPVVVISND 452


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 638 LSTVVYFVLLSFPMWLSVSDLSGP 567
           L+T  +F+  +FP WL   +   P
Sbjct: 229 LNTYYFFLRQAFPFWLPSKEYDLP 252


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 638 LSTVVYFVLLSFPMWLSVSDLSGP 567
           L+T  +F+  +FP WL   +   P
Sbjct: 229 LNTYYFFLRQAFPFWLPSKEYDLP 252


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 655 WLLFETYLPLCIL 617
           + LF TY+P C++
Sbjct: 246 YYLFHTYIPTCLI 258


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 75  MTAWPAVALCLLVCTS 122
           +T W AV +   +CTS
Sbjct: 132 ITGWSAVVITAAICTS 147


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,246
Number of Sequences: 438
Number of extensions: 3251
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)