Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0604
         (826 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28460.1 68415.m03457 DC1 domain-containing protein contains ...    29   3.7  
At4g10560.1 68417.m01729 DC1 domain-containing protein contains ...    29   5.0  
At2g27900.1 68415.m03382 expressed protein                             28   6.5  
At1g73960.1 68414.m08565 expressed protein similar to TATA bindi...    28   8.7  

>At2g28460.1 68415.m03457 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 704

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +1

Query: 529 STTSEPLVHNSHDGPL 576
           +TTSEPLVH SH  PL
Sbjct: 516 ATTSEPLVHESHRHPL 531


>At4g10560.1 68417.m01729 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 703

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +1

Query: 529 STTSEPLVHNSHDGPL 576
           +TTSEPLVH SH  PL
Sbjct: 521 ATTSEPLVHESHMHPL 536


>At2g27900.1 68415.m03382 expressed protein
          Length = 1124

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +3

Query: 24  RALTTPSTRTTSRH---NNDMTAWPAVALCLLVCTSQWA 131
           R+ T   +RT+S H   N+D+TA    +LCLL    ++A
Sbjct: 744 RSFTRSQSRTSSSHFSTNDDLTAQTGSSLCLLRSMDKYA 782


>At1g73960.1 68414.m08565 expressed protein similar to TATA binding
           protein associated factor (GI:2827282) [Homo sapiens];
           similar to Transcription initiation factor TFIID 150 kDa
           subunit (TAFII-150) (TAFII150) (Swiss-Prot:Q24325)
           [Drosophila melanogaster]
          Length = 1390

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -3

Query: 251 IRYFVXMFSGCLDWSGLLTRTDNNIFFARSWF-C--DQFH 141
           I Y+V      + + G +  TDN +  AR WF C  D++H
Sbjct: 161 INYWVEKIESGIHFDGNIVHTDNQMRRARCWFPCIDDEYH 200


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,721,541
Number of Sequences: 28952
Number of extensions: 267049
Number of successful extensions: 668
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1892353600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)