Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0603
         (941 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    39   5e-05
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    30   0.023
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   6.0  

>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 39.1 bits (87), Expect = 5e-05
 Identities = 21/63 (33%), Positives = 31/63 (49%)
 Frame = +1

Query: 298 LPRGETFVHTNELQMEEAVKVFRVLYYAKDFDVFMRTACWMRERINGGMFVYAFTAACFH 477
           L R E F        + A K+ R+   A+  D  +  A + R+R+N  +F YAF+ A  H
Sbjct: 74  LGRHENFSLFIPKHRKVAGKLIRIFLAAESIDDLLSNAVFCRDRVNPYLFYYAFSVALLH 133

Query: 478 RTD 486
           R D
Sbjct: 134 RPD 136



 Score = 30.3 bits (65), Expect = 0.023
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 790 INKERRGEIMMYANQQLLARMRL 858
           ++K RRGEI  Y +QQ++AR  +
Sbjct: 223 VDKNRRGEIFYYMHQQIIARFNI 245


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 30.3 bits (65), Expect = 0.023
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 382 KDFDVFMRTACWMRERINGGMFVYAFTAACFHRTD 486
           ++ D  +  A + R+R+N  +F YA + A  HR D
Sbjct: 102 RNVDDLLSVAVYARDRVNPYLFSYALSVAILHRQD 136



 Score = 27.5 bits (58), Expect = 0.16
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 790 INKERRGEIMMYANQQLLAR 849
           + K RRGE+  Y +QQ++AR
Sbjct: 223 VAKNRRGELFYYMHQQIIAR 242



 Score = 25.0 bits (52), Expect = 0.85
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +2

Query: 680 LSQNDVMSYFMXDVXLNTYMYYLHMNYP 763
           L +   ++YF  D+ +N + ++ H+ YP
Sbjct: 188 LEEEHRLAYFREDLGINLHHWHWHLVYP 215



 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 607 PEDRVLGGFSHLHHKGFTDDMAVNEE 530
           P   V   F+HL H+ FT  + VN +
Sbjct: 466 PRGSVFVRFTHLQHQPFTYKITVNNQ 491


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 450 DEHASVDPFSHPARSPHENIEVLSVVEDSEDFDGFF 343
           D   ++ P + P R P +N + L  +E S +  G F
Sbjct: 125 DMETTLTPCASPNRKPDDNQDHLRRLEMSLEKSGLF 160


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,686
Number of Sequences: 336
Number of extensions: 3873
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26478848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)