Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0603
         (941 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40684| Best HMM Match : NIF (HMM E-Value=0)                         30   3.1  
SB_37217| Best HMM Match : 7tm_1 (HMM E-Value=0.0005)                  29   5.5  
SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)                        28   9.5  

>SB_40684| Best HMM Match : NIF (HMM E-Value=0)
          Length = 402

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +1

Query: 295 MLPRGETFVHTNELQMEEAVKVFRVLYYAKDFDVFMRTACWMR---ERINGGMFVYAFTA 465
           +L   ET VH +  ++E+A   F V Y    + VF+RT   ++   ER++    V  FTA
Sbjct: 220 VLDLDETLVHCSLNKLEDATLSFPVSYQDITYQVFVRTRPHLKYFLERVSKVFEVILFTA 279

Query: 466 A 468
           +
Sbjct: 280 S 280


>SB_37217| Best HMM Match : 7tm_1 (HMM E-Value=0.0005)
          Length = 228

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = -1

Query: 410 AVLMKTSKSLA**RTRKTLTASSIWS-SLVWTKVSPRGSMPILYISMNCLTTSHSCTCRN 234
           A+ +K S      + R   T ++IW  SLV      +  +P+  I M  +  S    C +
Sbjct: 123 AIYLKNSYLFVVTKKRVFATIAAIWLYSLVTLTYDNKNLLPLYCILMATIIVSLGVVCVS 182

Query: 233 FSRCYTPWR 207
           + +C+T  R
Sbjct: 183 YGKCFTAIR 191


>SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 1011

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 406 TACWMRERINGGMFVYAFTAACFHR 480
           TAC+  + I+GG+ V+++  + FHR
Sbjct: 836 TACFWGQLISGGITVFSYRISSFHR 860


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,297,203
Number of Sequences: 59808
Number of extensions: 520278
Number of successful extensions: 1232
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2752873431
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)