Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0603
         (941 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66519-5|CAA91382.2|  500|Caenorhabditis elegans Hypothetical pr...    30   2.8  
Z77657-6|CAB01150.2|  607|Caenorhabditis elegans Hypothetical pr...    29   4.8  
AC006638-8|AAK85487.2|  644|Caenorhabditis elegans Hypothetical ...    28   8.4  

>Z66519-5|CAA91382.2|  500|Caenorhabditis elegans Hypothetical
           protein B0334.5 protein.
          Length = 500

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = +2

Query: 95  VFTKEPMVNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYNIEKSCDKYMNAMSLSSS 274
           +F K+  V     M+    + ++ HI QP    ++  I    N+E +        S +S 
Sbjct: 68  LFIKKDQVTPRPIMRRSTQLSIIHHIRQPCQ-SNVPRICDAPNLETTATSTTKLFSWNSQ 126

Query: 275 WRCIR 289
           W C+R
Sbjct: 127 WTCLR 131


>Z77657-6|CAB01150.2|  607|Caenorhabditis elegans Hypothetical
           protein F08H9.1 protein.
          Length = 607

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -3

Query: 411 RSPHENIEVLSVVEDSEDFD 352
           R+P+ENI++L   +DSED D
Sbjct: 581 RAPYENIDLLLSTDDSEDID 600


>AC006638-8|AAK85487.2|  644|Caenorhabditis elegans Hypothetical
           protein F41G4.7 protein.
          Length = 644

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 22/79 (27%), Positives = 32/79 (40%)
 Frame = +1

Query: 178 ADHV*GHQGDRQGV*HREKLRQVHECDVVKQFMEMYKMGMLPRGETFVHTNELQMEEAVK 357
           AD       DR+   HRE  R++HE      F + +    LP   TF  + E     +  
Sbjct: 57  ADDEQRQSADRRAQDHRESFRRLHE--EASSFADFFTNARLPAMRTF--SPEAARSSSNS 112

Query: 358 VFRVLYYAKDFDVFMRTAC 414
             R     +DF++ M  AC
Sbjct: 113 SDRNPRMDQDFELAMELAC 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,971,041
Number of Sequences: 27780
Number of extensions: 369549
Number of successful extensions: 877
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2433684176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)