Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0603
         (941 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27110.2 68415.m03258 far-red impaired responsive protein, pu...    29   4.5  
At2g27110.1 68415.m03257 far-red impaired responsive protein, pu...    29   4.5  
At5g18580.1 68418.m02196 tonneau 2 (TON2) identical to tonneau 2...    29   5.9  
At3g60800.1 68416.m06801 zinc finger (DHHC type) family protein ...    28   7.8  

>At2g27110.2 68415.m03258 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 851

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 310 ETFVHT-NELQMEEAVKVFRVLYYAKDFDVFMRTACWMRERIN 435
           ETF HT N ++ +     FRV  +  D   ++ T C+   R N
Sbjct: 495 ETFAHTANRIEDDGTTSTFRVANFENDNKAYIVTFCYPEMRAN 537


>At2g27110.1 68415.m03257 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 851

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 310 ETFVHT-NELQMEEAVKVFRVLYYAKDFDVFMRTACWMRERIN 435
           ETF HT N ++ +     FRV  +  D   ++ T C+   R N
Sbjct: 495 ETFAHTANRIEDDGTTSTFRVANFENDNKAYIVTFCYPEMRAN 537


>At5g18580.1 68418.m02196 tonneau 2 (TON2) identical to tonneau 2
           protein (TON2) GI:11494362 from [Arabidopsis thaliana];
           contains Pfam profile: PF00036 EF hand
          Length = 480

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 197 IKEIAKEYNIEKSCDKYMNAMSLSSSWRCIRWAC 298
           ++++AK   ++K  D  +NA  L++ W C+R  C
Sbjct: 89  VQKLAKYRFLKKQSDLLLNADDLAAMWVCLRENC 122


>At3g60800.1 68416.m06801 zinc finger (DHHC type) family protein
           contains DHHC zinc finger domain PF01529
          Length = 307

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +2

Query: 599 VLWKYYGITVTDDNLVVIDWRKGVRRSLSQNDVMS 703
           +LW Y+ +  TD  +V  +WR        ++D ++
Sbjct: 74  LLWSYFSVVFTDPGVVPPNWRPSTDEERGESDPLN 108


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,328,986
Number of Sequences: 28952
Number of extensions: 354665
Number of successful extensions: 913
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2256303936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)