Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0602
(807 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 5.5
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 5.5
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 5.5
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 5.5
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 5.5
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 5.5
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 5.5
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 5.5
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 5.5
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 5.5
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 5.5
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 25 9.6
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 25 9.6
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 25 9.6
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.5
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +2
Query: 422 KTENPRLLFWKIRADYHRIERKWTGYSKRASKGF-PIIEK--XVFAFRQPSXRXGVGSLY 592
K +N L+ + + ++H+ + K+ GY + KGF P E V ++QP R +
Sbjct: 588 KLKNANLIINQAKCEFHQSQVKFIGY-HISEKGFTPCQENIDKVLQWKQPKNRKELRQFL 646
Query: 593 GLMVFL 610
G + +L
Sbjct: 647 GSVNYL 652
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.5
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +2
Query: 422 KTENPRLLFWKIRADYHRIERKWTGYSKRASKGF-PIIEK--XVFAFRQPSXRXGVGSLY 592
K +N L+ + + ++H+ + K+ GY + KGF P E V ++QP R +
Sbjct: 588 KLKNANLIINQAKCEFHQSQVKFIGY-HISEKGFTPCQENIDKVLQWKQPKNRKELRQFL 646
Query: 593 GLMVFL 610
G + +L
Sbjct: 647 GSVNYL 652
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.5
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +2
Query: 422 KTENPRLLFWKIRADYHRIERKWTGYSKRASKGF-PIIEK--XVFAFRQPSXRXGVGSLY 592
K +N L+ + + ++H+ + K+ GY + KGF P E V ++QP R +
Sbjct: 588 KLKNANLIINQAKCEFHQSQVKFIGY-HISEKGFTPCQENIDKVLQWKQPKNRKELRQFL 646
Query: 593 GLMVFL 610
G + +L
Sbjct: 647 GSVNYL 652
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.5
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +2
Query: 422 KTENPRLLFWKIRADYHRIERKWTGYSKRASKGF-PIIEK--XVFAFRQPSXRXGVGSLY 592
K +N L+ + + ++H+ + K+ GY + KGF P E V ++QP R +
Sbjct: 588 KLKNANLIINQAKCEFHQSQVKFIGY-HISEKGFTPCQENIDKVLQWKQPKNRKELRQFL 646
Query: 593 GLMVFL 610
G + +L
Sbjct: 647 GSVNYL 652
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.5
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +2
Query: 422 KTENPRLLFWKIRADYHRIERKWTGYSKRASKGF-PIIEK--XVFAFRQPSXRXGVGSLY 592
K +N L+ + + ++H+ + K+ GY + KGF P E V ++QP R +
Sbjct: 588 KLKNANLIINQAKCEFHQSQVKFIGY-HISEKGFTPCQENIDKVLQWKQPKNRKELRQFL 646
Query: 593 GLMVFL 610
G + +L
Sbjct: 647 GSVNYL 652
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.5
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +2
Query: 422 KTENPRLLFWKIRADYHRIERKWTGYSKRASKGF-PIIEK--XVFAFRQPSXRXGVGSLY 592
K +N L+ + + ++H+ + K+ GY + KGF P E V ++QP R +
Sbjct: 588 KLKNANLIINQAKCEFHQSQVKFIGY-HISEKGFTPCQENIDKVLQWKQPKNRKELRQFL 646
Query: 593 GLMVFL 610
G + +L
Sbjct: 647 GSVNYL 652
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.5
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +2
Query: 422 KTENPRLLFWKIRADYHRIERKWTGYSKRASKGF-PIIEK--XVFAFRQPSXRXGVGSLY 592
K +N L+ + + ++H+ + K+ GY + KGF P E V ++QP R +
Sbjct: 588 KLKNANLIINQAKCEFHQSQVKFIGY-HISEKGFTPCQENIDKVLQWKQPKNRKELRQFL 646
Query: 593 GLMVFL 610
G + +L
Sbjct: 647 GSVNYL 652
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.5
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +2
Query: 422 KTENPRLLFWKIRADYHRIERKWTGYSKRASKGF-PIIEK--XVFAFRQPSXRXGVGSLY 592
K +N L+ + + ++H+ + K+ GY + KGF P E V ++QP R +
Sbjct: 588 KLKNANLIINQAKCEFHQSQVKFIGY-HISEKGFTPCQENIDKVLQWKQPKNRKELRQFL 646
Query: 593 GLMVFL 610
G + +L
Sbjct: 647 GSVNYL 652
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.5
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +2
Query: 422 KTENPRLLFWKIRADYHRIERKWTGYSKRASKGF-PIIEK--XVFAFRQPSXRXGVGSLY 592
K +N L+ + + ++H+ + K+ GY + KGF P E V ++QP R +
Sbjct: 588 KLKNANLIINQAKCEFHQSQVKFIGY-HISEKGFTPCQENIDKVLQWKQPKNRKELRQFL 646
Query: 593 GLMVFL 610
G + +L
Sbjct: 647 GSVNYL 652
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.5
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +2
Query: 422 KTENPRLLFWKIRADYHRIERKWTGYSKRASKGF-PIIEK--XVFAFRQPSXRXGVGSLY 592
K +N L+ + + ++H+ + K+ GY + KGF P E V ++QP R +
Sbjct: 588 KLKNANLIINQAKCEFHQSQVKFIGY-HISEKGFTPCQENIDKVLQWKQPKNRKELRQFL 646
Query: 593 GLMVFL 610
G + +L
Sbjct: 647 GSVNYL 652
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.5
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +2
Query: 422 KTENPRLLFWKIRADYHRIERKWTGYSKRASKGF-PIIEK--XVFAFRQPSXRXGVGSLY 592
K +N L+ + + ++H+ + K+ GY + KGF P E V ++QP R +
Sbjct: 588 KLKNANLIINQAKCEFHQSQVKFIGY-HISEKGFTPCQENIDKVLQWKQPKNRKELRQFL 646
Query: 593 GLMVFL 610
G + +L
Sbjct: 647 GSVNYL 652
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.4 bits (53), Expect = 9.6
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +1
Query: 52 SLVQFLRTQLNEFGIINTTPDF----ANFFAAPSSIKSAPSLAGEATWSFFKQL 201
SLV++LR +L + + + +PDF F S+ S + WSF + +
Sbjct: 582 SLVRYLRFELMKTSLASLSPDFDCIGLQFVVGVSASSHLASQWKDEVWSFTRSI 635
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1
Query: 22 VYQKLITAVTSLVQFLRTQLNEFGIINTTPD 114
+Y+ ++TSL+Q +QL+++ +I PD
Sbjct: 222 IYEIFKYSITSLLQIPVSQLSQYSVIFIVPD 252
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 25.4 bits (53), Expect = 9.6
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 191 SSSCTPVISLTSWPFSEPTDLE 256
S +C+P + T WP ++P+D E
Sbjct: 210 SYACSPGMLKTQWPSTQPSDGE 231
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,881,723
Number of Sequences: 5004
Number of extensions: 54068
Number of successful extensions: 160
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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