Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0602
         (807 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0167 - 26415319-26415494,26415591-26415840,26415909-264159...    38   0.009
08_01_0999 + 10145782-10146392,10147665-10147734,10149409-101496...    29   4.4  
05_05_0114 - 22488172-22488279,22488414-22488511,22488616-224887...    28   7.6  
02_01_0193 - 1305109-1305249,1305677-1305835,1305922-1305969,130...    28   7.6  
01_06_0872 + 32609792-32610178,32611262-32611387,32611477-326115...    28   7.6  

>02_05_0167 -
           26415319-26415494,26415591-26415840,26415909-26415974,
           26416457-26416600,26416813-26416868,26416966-26417101,
           26417190-26417277,26417379-26417482,26418515-26419180,
           26419337-26419432,26419974-26420242,26420334-26420489,
           26421153-26421192
          Length = 748

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = -1

Query: 225 DVREITGVQLLEEAPRCLSSKRRSGLN*AWSSEEVRKVGRRVDNAKFVQLSP 70
           DV  ++GV L EE  + LS+ +      +W+SEE RK+ +  D   F+Q  P
Sbjct: 463 DVTAVSGVNLREEEEQLLSAPKEE----SWASEEARKIAQEEDGKLFLQKGP 510


>08_01_0999 +
           10145782-10146392,10147665-10147734,10149409-10149643,
           10149726-10149799,10149881-10149955
          Length = 354

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = +3

Query: 501 LNGLPKDSRSSKRXCSLSV-NQATXSVLAHCTVSWSFCTSKLEVCYIEANGFYLGKLRGL 677
           L  LP  SR++   CS SV   AT S   H   S         V      GF++G +RGL
Sbjct: 63  LAALPLPSRAASLRCSPSVLAAATSSGSLHLLPSSLDAAGSAGVSVPAGAGFHVGPVRGL 122

Query: 678 LGDGNNELTMTS 713
              G  E  +T+
Sbjct: 123 DCGGGGEEWVTA 134


>05_05_0114 -
           22488172-22488279,22488414-22488511,22488616-22488784,
           22489310-22489377,22490485-22490521,22490660-22490741,
           22490845-22490903
          Length = 206

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 130 AAPSSIKSAPSLAGEATWSFFKQLYSGDFPXILAL 234
           A PSS+ S+ ++AG+ TW+  + +++     IL L
Sbjct: 32  APPSSVHSSYAVAGDLTWAILETIHAAIGHQILTL 66


>02_01_0193 -
           1305109-1305249,1305677-1305835,1305922-1305969,
           1306621-1306752,1306842-1306896,1307600-1307649,
           1307822-1307917,1308001-1308078,1308169-1308243,
           1308648-1308764,1308843-1308911,1309035-1309358,
           1309534-1309587,1309688-1309747
          Length = 485

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = -2

Query: 470 DSPLLSSKIRALGFPF*SWISSVKXLSTXSCANT*RQFPGKVRWRPSNVKMC*PFTTTAR 291
           D+P   S    LG P  ++    + +   S  N  R FPG++  +   + +  PFT  A 
Sbjct: 414 DTPASPSCGACLGGPRDTYARMNEPMVCVSTTN--RNFPGRMGHKEGQIYLASPFTAAAS 471

Query: 290 SLDGH 276
           +L G+
Sbjct: 472 ALTGY 476


>01_06_0872 +
           32609792-32610178,32611262-32611387,32611477-32611550,
           32611944-32612013,32612088-32612143,32612236-32612307,
           32612384-32612478,32612660-32612726,32612809-32612938,
           32613135-32613350,32613461-32613591,32614044-32614218,
           32614292-32614382,32614653-32614810,32615059-32615247,
           32615551-32615564,32616003-32616228
          Length = 758

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 307 NGQHIFTFDGRHLTFPGNCRYVLAHXHVDR 396
           NGQH+  +D R   F G  RY   H H+ R
Sbjct: 302 NGQHV-DYDQRPDIFRGTIRYASVHAHLGR 330


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,136,431
Number of Sequences: 37544
Number of extensions: 370545
Number of successful extensions: 844
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)