Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0602
         (807 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26224| Best HMM Match : VWD (HMM E-Value=0)                         37   0.022
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)                   34   0.12 
SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.16 
SB_39328| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 31   1.5  
SB_54863| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)                   29   3.4  
SB_27062| Best HMM Match : DUF497 (HMM E-Value=4.9)                    29   5.9  
SB_34342| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  

>SB_26224| Best HMM Match : VWD (HMM E-Value=0)
          Length = 736

 Score = 36.7 bits (81), Expect = 0.022
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +1

Query: 313 QHIFTFDGRHLTFPGNCRYVLAHXHVDRXFTLLIQLQNGK 432
           +H  TFDGRH+ F G C Y LA   +       + +QN K
Sbjct: 222 RHYRTFDGRHIDFIGKCSYTLAQDCIPGSDQFSLHVQNDK 261



 Score = 29.5 bits (63), Expect = 3.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 316 HIFTFDGRHLTFPGNCRYVL 375
           H  +FDG+  TF G C+Y+L
Sbjct: 576 HFVSFDGKAFTFGGKCQYLL 595


>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
          Length = 2200

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = +1

Query: 280  PSKLRAVVVNGQHIFTFDGRHLTFPG----NCRYVLAHXHVDRXFTLLIQ 417
            P    A++    H+ TFD  +  FPG     C YVLA    D  FT++ Q
Sbjct: 1639 PFNSTAMIFGKPHVSTFDSLYYRFPGYNKPECTYVLARDVRDNKFTIMSQ 1688


>SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1530

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
 Frame = +1

Query: 271  TKCPSKLRAVVVNGQHIFTFDGRHLTFPGNCRYVLA-HXH----VDRXFTLLIQLQNGKP 435
            T  P      +V   H  TFD R  +  G C YVL+ H H      + FT+ I++ +   
Sbjct: 842  TDTPCSGTCTMVGNSHFTTFDSRSYSMHGQCDYVLSEHCHFSNDTTKQFTIHIKISSDGS 901

Query: 436  KALIL 450
            + LI+
Sbjct: 902  RQLIV 906


>SB_39328| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 1049

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 488 WTGYSKRASKGFPIIEKXVFAFRQPSXRXGVGSLY 592
           ++GY ++ + G  I+E+ VF  R P  + G+G  Y
Sbjct: 830 FSGYFQKVALGSTIMEEKVFDLRNPMMQSGIGKRY 864


>SB_54863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1251

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 401 SRC*SNFKTENPRLLFWKIRA-DYHR 475
           S C  N+  ENP L+ W++ A DYHR
Sbjct: 919 SYCIRNYIHENPDLILWELAANDYHR 944


>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
          Length = 705

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 316 HIFTFDGRHLTFPGNCRYVLA 378
           H  TFDGR  +F G C YV++
Sbjct: 33  HYKTFDGRLYSFQGGCNYVMS 53


>SB_27062| Best HMM Match : DUF497 (HMM E-Value=4.9)
          Length = 325

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +3

Query: 573 SVLAHCTVSWSFCTSKLEVCYIE---ANGFYLGKLRGLLGDGNNE 698
           S +AH T S + C +   +CY+     +G +LGK+  L  D N E
Sbjct: 240 SRIAHFTESKAICCNHYHLCYLVIAIKDGVHLGKIGSLKKDQNFE 284


>SB_34342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 665

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +1

Query: 298 VVVNGQHIFTFDGRHLTFPGNCRYVLAHXHVDRXFTLLIQLQNGKPKALILEDK 459
           + ++  HIF  DG H  FP +   V AH   +   T  I+L       L+LE +
Sbjct: 252 IAIHFSHIFAGDGFHFVFP-SLLQVYAHHQGNDMVTRAIELFASVAPILLLETR 304


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,198,023
Number of Sequences: 59808
Number of extensions: 419400
Number of successful extensions: 1101
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)