Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0602
         (807 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   1.1  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   2.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.4  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   5.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   5.8  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/51 (25%), Positives = 21/51 (41%)
 Frame = +3

Query: 510 LPKDSRSSKRXCSLSVNQATXSVLAHCTVSWSFCTSKLEVCYIEANGFYLG 662
           L  D   S + C     Q + ++L      +   T    VC  +A+GF+ G
Sbjct: 30  LDNDKEQSAQVCYRGAPQDSENLLGRVLAEFDGTTVLCRVCGDKASGFHYG 80


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +1

Query: 202 YSGDFPXILALLRAYRPRASTH*TKCPSKLRAVVVNGQH 318
           Y+ D+P +   ++ + PR + +    PS +R   + G H
Sbjct: 138 YNFDYPQVPYTVKNFHPRCAVNNYNDPSNVRNCELVGLH 176


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 97   INTTPDFANFFAAPSSIKSA 156
            +N  PD  N +A P+  KSA
Sbjct: 1467 LNHYPDLHNLYAVPTDKKSA 1486


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 573 SVLAHCTVSWSFCTSK 620
           S++ +C V W F TSK
Sbjct: 71  SLVGNCCVIWIFSTSK 86


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 573 SVLAHCTVSWSFCTSK 620
           S++ +C V W F TSK
Sbjct: 71  SLVGNCCVIWIFSTSK 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,757
Number of Sequences: 438
Number of extensions: 4151
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)