Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0602
         (807 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14730.1 68416.m01862 pentatricopeptide (PPR) repeat-containi...    30   2.1  
At3g13670.1 68416.m01722 protein kinase family protein contains ...    28   8.4  
At2g40116.1 68415.m04933 phosphoinositide-specific phospholipase...    28   8.4  

>At3g14730.1 68416.m01862 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 653

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 539 PFR*SGILWKPV*NSLSIFFQFDDSPLLSSKIRALG 432
           P R   +LW  + N  S  F+F+D+ L+ SK+R  G
Sbjct: 222 PDRDDSVLWNALVNGYSQIFRFEDALLVFSKMREEG 257


>At3g13670.1 68416.m01722 protein kinase family protein contains
           Pfam domains, PF00069: Protein kinase domain
          Length = 703

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 307 NGQHIFTFDGRHLTFPGNCRYVLAHXHVDR 396
           +GQH+  +D R   F G  RY  AH H+ R
Sbjct: 302 SGQHV-EYDQRPDMFRGTVRYASAHAHLGR 330


>At2g40116.1 68415.m04933 phosphoinositide-specific phospholipase C
           family protein contains Pfam profile: PF00388
           phosphatidylinositol-specific phospholipase C
          Length = 613

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 102 VDNAKFVQLSPQELDERCDSCDQLLIDHTQLXL 4
           VD  + + LS QELD  C S  Q ++  TQ  L
Sbjct: 371 VDKVRRLSLSEQELDRTCSSNSQDVVRFTQRNL 403


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,374,090
Number of Sequences: 28952
Number of extensions: 296629
Number of successful extensions: 680
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)