Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0601
(811 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 109 3e-24
SB_19388| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 7e-10
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10) 40 0.002
SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.63
SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_2806| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026) 28 7.8
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 109 bits (261), Expect = 3e-24
Identities = 48/68 (70%), Positives = 58/68 (85%)
Frame = +2
Query: 59 YQTFQRIVENVNVIIATYNDDGGPMGDVRVDPSKGSVGFGSGLHGWAFTLKQFSEMYADK 238
YQTF RIVE++NVIIATY+D+ GPMG+++V P KG+V FGSGLHGWAFTLKQ SE+Y+ K
Sbjct: 176 YQTFARIVESINVIIATYSDEDGPMGNIQVGPEKGTVAFGSGLHGWAFTLKQISEIYSAK 235
Query: 239 FKIDLASL 262
FKI A L
Sbjct: 236 FKIPPAKL 243
Score = 100 bits (240), Expect = 1e-21
Identities = 66/159 (41%), Positives = 86/159 (54%), Gaps = 5/159 (3%)
Frame = +1
Query: 250 PCKLMNRLWGENFFNPQTKKWSKQKDDDNKRSFCMYVLDPIYKVFDAIMKFKKEEIDDLL 429
P KLM RLWG+ F N + KKW K++ N R F +VLDPI+K+FDAIM FKKE +LL
Sbjct: 240 PAKLMKRLWGDQFINAEDKKWKKEQATGNVRGFNQFVLDPIFKMFDAIMNFKKEATANLL 299
Query: 430 KKIGVTIKHEDSDKDGKALLKVVMRSCCLLVKLCFR*LPFIYHHL*WPRNIV---WRC-- 594
+K+ + + E+ + +GK L K VMR + L I HL P +V +RC
Sbjct: 300 EKLKIKLTVEERELEGKPLFKTVMRKWLPAGEAM---LQMIAIHL--PSPVVSQKYRCEL 354
Query: 595 YTXDPTMMXLPLVSRAVIPEAPLMMYVSKMVPTSDKGRF 711
P + L +A PE MVPTSDKGRF
Sbjct: 355 LYEGPQDDAVALGIKACDPE---------MVPTSDKGRF 384
Score = 83.4 bits (197), Expect = 2e-16
Identities = 39/54 (72%), Positives = 44/54 (81%), Gaps = 1/54 (1%)
Frame = +3
Query: 510 LPAGEALLQMIAIHLPSPVVAQKYRMEMLYXGPHDDXAAIGIKSCD-S*SPTDD 668
LPAGEA+LQMIAIHLPSPVV+QKYR E+LY GP DD A+GIK+CD PT D
Sbjct: 327 LPAGEAMLQMIAIHLPSPVVSQKYRCELLYEGPQDDAVALGIKACDPEMVPTSD 380
Score = 54.4 bits (125), Expect = 1e-07
Identities = 23/33 (69%), Positives = 27/33 (81%)
Frame = +2
Query: 710 FYAFGRVFSGKVVTGPKSRIMGPNFTPGKERGL 808
FYAFGRVFSGKV +G K RIMGP++ PGK+ L
Sbjct: 384 FYAFGRVFSGKVASGQKVRIMGPHYVPGKKEDL 416
>SB_19388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 61.7 bits (143), Expect = 7e-10
Identities = 27/37 (72%), Positives = 30/37 (81%)
Frame = +2
Query: 152 PSKGSVGFGSGLHGWAFTLKQFSEMYADKFKIDLASL 262
P KG+V FGSGLHGWAFTLKQ SE+Y+ KFKI A L
Sbjct: 34 PEKGTVAFGSGLHGWAFTLKQISEIYSAKFKIPPAKL 70
Score = 58.0 bits (134), Expect = 8e-09
Identities = 23/43 (53%), Positives = 29/43 (67%)
Frame = +1
Query: 250 PCKLMNRLWGENFFNPQTKKWSKQKDDDNKRSFCMYVLDPIYK 378
P KLM RLWG+ F N + KKW K++ N R F +VLDPI+K
Sbjct: 67 PAKLMKRLWGDQFINAEDKKWKKEQATGNVRGFNQFVLDPIFK 109
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 43.2 bits (97), Expect = 3e-04
Identities = 16/49 (32%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Frame = +1
Query: 250 PCKLMNRLWGENFFNPQTKKWSKQKD-DDNKRSFCMYVLDPIYKVFDAI 393
P RLWG+ +F+ +T+K++++ ++RSF ++L+P+YK+F +
Sbjct: 269 PQDFAQRLWGDMYFSSKTRKFTRKAPLSTSQRSFVEFILEPMYKIFGQV 317
Score = 37.9 bits (84), Expect = 0.010
Identities = 16/61 (26%), Positives = 34/61 (55%)
Frame = +2
Query: 59 YQTFQRIVENVNVIIATYNDDGGPMGDVRVDPSKGSVGFGSGLHGWAFTLKQFSEMYADK 238
Y + +++ VN +++ +++ D+ + P G+V F S + + FTL F+++Y D
Sbjct: 206 YYKLKHVIDEVNGLLSVFSEGAD---DLVISPLLGNVCFASSSYHFCFTLLSFAKLYVDS 262
Query: 239 F 241
F
Sbjct: 263 F 263
Score = 33.1 bits (72), Expect = 0.27
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2
Query: 710 FYAFGRVFSGKVVTGPKSRIMGPNFT 787
F+ FGRV SG + G + RI+G N+T
Sbjct: 358 FHVFGRVMSGTLYAGQQVRILGENYT 383
>SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)
Length = 563
Score = 40.3 bits (90), Expect = 0.002
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 6/68 (8%)
Frame = +1
Query: 259 LMNRLWGENFFNPQTKKWSKQKDDDNKRS-FCMYVLDPIYKVFDAIM----KFKKEEIDD 423
L LWG+ + + +TK+ K+ NK+ F ++LD I+ ++DA++ K K E+I +
Sbjct: 253 LQKTLWGDFYLDSKTKRIFKKAQLKNKKPLFVQFILDNIWALYDAVVIRRDKVKSEQISN 312
Query: 424 LLK-KIGV 444
LK KI V
Sbjct: 313 SLKLKISV 320
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 701 KVVFYAFGRVFSGKVVTGPKSRIMGPNFTP 790
K F AF RV+SG + G + I+GP P
Sbjct: 499 KTHFMAFARVYSGTISRGQQLYILGPKHDP 528
>SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1393
Score = 31.9 bits (69), Expect = 0.63
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = -2
Query: 270 PVHKLARSILNLSAYISENCLRVKAHP*RPDPKPTEPLLGSTRTSPMGPPSS 115
P + + IL+ + N V+ +P PK T P+ G+ + PMGPP S
Sbjct: 613 PYGQKIKQILDAQRLLPSNSQNVEDSWRKPRPKSTPPM-GAVQVLPMGPPPS 663
>SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 699 VGGRHHLAHVHHQWGFRNH 643
+GGRH HHQWG H
Sbjct: 321 IGGRHFPMGEHHQWGTGQH 339
>SB_2806| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 600
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/54 (24%), Positives = 24/54 (44%)
Frame = +1
Query: 289 FNPQTKKWSKQKDDDNKRSFCMYVLDPIYKVFDAIMKFKKEEIDDLLKKIGVTI 450
++P T KW +R C + I+ + K + ++D K +GVT+
Sbjct: 443 YDPHTNKWKMVSPMLKRRGECFAIRKGIFVEWTLCFKAMEMNLEDQNKGVGVTV 496
>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
Length = 3342
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -1
Query: 775 SHDATFWSGNNLARENASKGVENDLCRRSAPSCSRTSSVGLQESQLLIPMAAXSS 611
S ATF S N + + S V + S P+ TSS G+ S + P +S
Sbjct: 3020 STGATFKSSNGIYSASTSNVVSSTSAGSSPPTSGITSSAGVNISSTITPTTTFTS 3074
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 373 YKVFDAIMKFKKEEIDDLLKKIGVTI 450
Y+ I K K+EIDDL KK+G+ +
Sbjct: 482 YEEHPEITKQSKQEIDDLRKKMGIKV 507
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,188,373
Number of Sequences: 59808
Number of extensions: 581565
Number of successful extensions: 1645
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1636
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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