Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0601
         (811 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    27   0.27 
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   4.4  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           23   4.4  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   4.4  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   5.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   7.7  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 26.6 bits (56), Expect = 0.27
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 322 KDDDNKRSFCMYVLDPIYKVFDAIMKFKKEEIDDLLKKIGV 444
           KD+ NK+   +   + +YK+ D I    K+EI D+L ++ V
Sbjct: 546 KDEANKKGVSLRFYNVVYKLIDNI----KKEIYDILPEVDV 582


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 171 VSGLVFMGGLSPSNNSLRCMLTNSRLTLQAYEQV 272
           +S  +F GG+S S  +L C  T +  +L+  +QV
Sbjct: 223 LSAGLFQGGISISGTALNCW-TQTENSLEKAKQV 255


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 171 VSGLVFMGGLSPSNNSLRCMLTNSRLTLQAYEQV 272
           +S  +F GG+S S  +L C  T +  +L+  +QV
Sbjct: 94  LSAGLFQGGISISGTALNCW-TQTENSLEKAKQV 126


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 171 VSGLVFMGGLSPSNNSLRCMLTNSRLTLQAYEQV 272
           +S  +F GG+S S  +L C  T +  +L+  +QV
Sbjct: 223 LSAGLFQGGISISGTALNCW-TQTENSLEKAKQV 255


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -1

Query: 724 SKGVENDLCRRSAPSCSRTSSVGLQESQLLIPMAAXSSWGPSYNISIRYF 575
           SK  E+D  RRS+      + +   +  ++I       W P Y +S+ Y+
Sbjct: 235 SKKSEDDKIRRSSIGFLTRAKIRTLKMTVIIIAVFFICWTPYYVMSLWYW 284


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 668 IISGASGITALDTNGSXI 615
           ++SG++G  A D NG  I
Sbjct: 339 VLSGSTGKVAFDDNGDRI 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,894
Number of Sequences: 438
Number of extensions: 5202
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)