Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0596
         (727 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   2e-05
SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   9e-04
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   9e-04
SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)               40   0.002
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.014
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.058
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.077
SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)                 32   0.54 
SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)                 32   0.54 
SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)            29   5.1  

>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 21/24 (87%), Positives = 22/24 (91%)
 Frame = -3

Query: 422 DVVAVSQAPSPESNPDSPLPVTTM 351
           DVVAVSQAPSPESNP+SP PV TM
Sbjct: 105 DVVAVSQAPSPESNPNSPSPVVTM 128


>SB_56793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 41.1 bits (92), Expect = 9e-04
 Identities = 20/28 (71%), Positives = 21/28 (75%)
 Frame = +2

Query: 2   VPVVICLSQRLSHACLSASRIKAIPRMA 85
           +PVVICLSQRLSHACLS S      RMA
Sbjct: 134 LPVVICLSQRLSHACLSISTCTVKLRMA 161


>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 41.1 bits (92), Expect = 9e-04
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = -3

Query: 413 AVSQAPSPESNPDSPLPVTTM 351
           AVSQAPSPESNP+SP PV TM
Sbjct: 52  AVSQAPSPESNPNSPSPVVTM 72


>SB_1371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 20/28 (71%), Positives = 21/28 (75%)
 Frame = +2

Query: 2   VPVVICLSQRLSHACLSASRIKAIPRMA 85
           +PVVICLSQRLSHACLS S      RMA
Sbjct: 110 LPVVICLSQRLSHACLSISTRTVKLRMA 137


>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = +2

Query: 503 EARNRNEYTLNILTRNNWRASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVG 664
           +   R    ++++ R +WRASL            Y K+VAVKKLVV F    VG
Sbjct: 47  QTTTRVHAAMHLVIRIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVG 100


>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 35.1 bits (77), Expect = 0.058
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = -1

Query: 412 PFLRLPLRNRTLIPRYP 362
           PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240


>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 34.7 bits (76), Expect = 0.077
 Identities = 19/40 (47%), Positives = 21/40 (52%)
 Frame = +2

Query: 545 RNNWRASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVG 664
           R +WRASL            Y K+VAVKKLVV F    VG
Sbjct: 14  RIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVG 53


>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
          Length = 1797

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 12  LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 146
           L  CL D A+ ++ +    +Y  W+N+ +LV    L ++  CG+S
Sbjct: 447 LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 491


>SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)
          Length = 1304

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 12   LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYLDNCGNS 146
            L  CL D A+ ++ +    +Y  W+N+ +LV    L ++  CG+S
Sbjct: 866  LMTCLYDKAVFLTDEEYAAKYGRWVNVQMLVEEPELHFIAKCGSS 910


>SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/36 (47%), Positives = 18/36 (50%)
 Frame = +2

Query: 557 RASLXXXXXXXXXXXXYTKIVAVKKLVVAFVRRAVG 664
           RASL            Y K+VAVKKLVV F    VG
Sbjct: 5   RASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVG 40


>SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)
          Length = 203

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 643 CNYELFNRNNFSIRYWSWNYRGCWH 569
           C   +  RN   +RYW W  R C H
Sbjct: 91  CEVTVIARNILPVRYWIWLSRKCGH 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,327,942
Number of Sequences: 59808
Number of extensions: 461426
Number of successful extensions: 1202
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)