Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0596
         (727 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC033558-1|AAH33558.1|  195|Homo sapiens LASS5 protein protein.        32   2.4  
AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related ...    31   5.6  

>BC033558-1|AAH33558.1|  195|Homo sapiens LASS5 protein protein.
          Length = 195

 Score = 31.9 bits (69), Expect = 2.4
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = -1

Query: 727 RNAGSPTICPQTCQ-YHXGCGAPDSAAXKCNYELFNRNNFSIRYWSW 590
           RN   P    + C+  H G G  DSA    ++ LF     +I  W+W
Sbjct: 130 RNQDKPPTLTKFCESIHLGSGTSDSAGITIHFSLFQVGFITIISWNW 176


>AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related tumor
            marker CA125 protein.
          Length = 22152

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = -3

Query: 500  KSPVSLFFVTT---SRAGSG*FARLLPXLDVVAVSQAPSPESNPDSPLPVTTMVVA 342
            ++P  + ++TT       SG F+ + P +   +   + SPES P SPLPVT ++ +
Sbjct: 5614 RTPGDVSWMTTPPVEETSSG-FSLMSPSMTSPSPVSSTSPESIPSSPLPVTALLTS 5668


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,043,082
Number of Sequences: 237096
Number of extensions: 2118466
Number of successful extensions: 5497
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5497
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8567175942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)