Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0593
         (992 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S...    27   4.1  
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz...    27   4.1  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         26   7.2  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    26   9.5  
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    26   9.5  

>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 358 HFQQLRQISLGNEFKYKMEMEIKDENLRNSVPFVRQ 465
           H  QLR+  L N F+ K+E  I   + +  +PF+ Q
Sbjct: 54  HGPQLREYQLKNAFRPKLEGVISSLDNKLPIPFMNQ 89


>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -3

Query: 327 VFAATLCGYVFRYRIVVSGHQSTLDPHE 244
           VF A LC Y      VV GH  TL PH+
Sbjct: 6   VFKAVLCAYFIS---VVFGHGITLKPHQ 30


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 8/30 (26%), Positives = 21/30 (70%)
 Frame = +1

Query: 190 GAFETNALSVNNQHFPRNFMWIQGTLVPTN 279
           G ++ +++S++N  FP +FM+++   + T+
Sbjct: 17  GVYKISSISLSNSFFPHSFMFVKSLHLMTS 46


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 761 FFLPRYSIKVRQQCXRPKLLTA*TPNPCYFFLCYVQSYI 645
           FFL  YSI+        K     +P+PC  ++ YV+S I
Sbjct: 308 FFLQHYSIQHASSKLVGKYDLVESPDPCMQYIRYVKSEI 346


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 625 DVYPDENPTFIEPTETAN 572
           DV+PD NP F E T  +N
Sbjct: 542 DVFPDSNPVFDEFTNISN 559


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,070,697
Number of Sequences: 5004
Number of extensions: 83502
Number of successful extensions: 188
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 513276802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)