Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0593
         (992 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2499| Best HMM Match : Sugar_tr (HMM E-Value=1e-28)                 56   6e-08
SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)                    49   7e-06
SB_13666| Best HMM Match : IncA (HMM E-Value=3.7)                      32   0.63 
SB_21821| Best HMM Match : MRG (HMM E-Value=0)                         31   1.9  
SB_45906| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.4  
SB_20838| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.4  
SB_34423| Best HMM Match : 7tm_2 (HMM E-Value=6e-07)                   29   4.4  
SB_18562| Best HMM Match : K_tetra (HMM E-Value=9.8e-36)               29   5.9  

>SB_2499| Best HMM Match : Sugar_tr (HMM E-Value=1e-28)
          Length = 456

 Score = 55.6 bits (128), Expect = 6e-08
 Identities = 43/136 (31%), Positives = 60/136 (44%), Gaps = 6/136 (4%)
 Frame = +3

Query: 552 WTQLLAAFAVSVGSMNVGFSSGYTSPAVLTM---NIT-LDITKEEITWVGGLCR*QLWSX 719
           W   +A F  ++G ++ G+  GY+S A   +   N T L +  +EITW G L        
Sbjct: 38  WAVWMATFIAALGPLSFGYCMGYSSAATTQLENKNATDLYLNADEITWFGSLLNIGAMLG 97

Query: 720 ALLADF--DRIPRKKKAIMGTAVPFTIXWMLIANAINV*WXLLGRVYAGCXLESXSLAFP 893
             +  F  D I RK   I+ T+VPF   W+LI    N      GR  +G  +   SL  P
Sbjct: 98  GPIQGFLIDLIGRKFALIL-TSVPFCSGWLLIGFGKNAAMLNAGRFMSGLGVGMASLNVP 156

Query: 894 GYXGGTXSXGVXRALG 941
            Y   T S     A+G
Sbjct: 157 VYISETASFSNRGAMG 172


>SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)
          Length = 512

 Score = 48.8 bits (111), Expect = 7e-06
 Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 5/132 (3%)
 Frame = +3

Query: 561 LLAAFAVSVGSMNVGFSSGYTSPA----VLTMNITLDITKEEITWVGGLCR*QLWSXALL 728
           +LA F  ++G ++ GF  GY+S A    +     ++ +T  + +W   L        A L
Sbjct: 45  VLATFIAALGPLSFGFCLGYSSSALEDLIAESKESVKLTVSQGSWFSSLVTLGAILGAPL 104

Query: 729 ADFD-RIPRKKKAIMGTAVPFTIXWMLIANAINV*WXLLGRVYAGCXLESXSLAFPGYXG 905
             +      +K  IM  AVPF + WMLIA A +     +GR   G  +   SL  P Y  
Sbjct: 105 GGWTLEYFGRKGTIMACAVPFEVGWMLIAYANSHYMLYIGRFITGLAVGMVSLTVPVYIA 164

Query: 906 GTXSXGVXRALG 941
              S  +   LG
Sbjct: 165 EISSPSLRGMLG 176


>SB_13666| Best HMM Match : IncA (HMM E-Value=3.7)
          Length = 476

 Score = 32.3 bits (70), Expect = 0.63
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 561 LLAAFAVSVGSMNVGFSS-GYTSPAVLTMNITLDITKEEITWVGGLC 698
           LL  FAVSV    V F       PAVLT+ I L +    + W+G  C
Sbjct: 39  LLLLFAVSVQCSRVNFDDYPALEPAVLTIAIFLQVLLPLLIWLGATC 85


>SB_21821| Best HMM Match : MRG (HMM E-Value=0)
          Length = 292

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +1

Query: 391 NEFKYKMEMEIKDENLRNSVPFVRQLSTDSVKTKTEYDNGMEHRTNLQLRN 543
           N+   + + E++++NL++     +Q  +DS KTK E   G   R   +L N
Sbjct: 62  NDANLQKQRELREQNLKSKKARKKQEKSDSEKTKLEEVAGPTRRKRTRLNN 112


>SB_45906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 685

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 416 WKSRTRTCGILFHSLGN*AQTALKLRRNTITGWNTV 523
           W   +  CG+L   L +  QTA+KL  + ++ W  V
Sbjct: 506 WSRHSARCGVLGRRLSDAPQTAVKLSSDCLSEWGQV 541


>SB_20838| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 903

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = +1

Query: 454 FVRQLSTDSVKTKTEYDNGMEHRTNLQLRNCFYGRSFLQRLQ 579
           FV QL TD V   TE+D G E   N+Q+++    R  L R Q
Sbjct: 405 FVTQLLTDLVYFVTEHDTGGEDVLNIQVQDPNRDRQKLMREQ 446


>SB_34423| Best HMM Match : 7tm_2 (HMM E-Value=6e-07)
          Length = 656

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 606 FSSGYTSPAVLTMNITLDITKEEITWVGGL 695
           FS   T PAV  MN+ + I   +ITW+ G+
Sbjct: 155 FSELRTIPAVNLMNLAVSILMAQITWLAGV 184


>SB_18562| Best HMM Match : K_tetra (HMM E-Value=9.8e-36)
          Length = 407

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 519 PYKSTTQKLFLWTQLLAAFAVSVGSMNVGFSSGYTSPA-VLTMNITLDITKEEIT 680
           PY S+T K+F W   LA   VS+ ++ +     +   +  +T N+T + T E  T
Sbjct: 177 PYSSSTAKVFAWVS-LAFIVVSIFTICIWTVEMFKGDSKTVTRNVTRNATHESYT 230


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,276,679
Number of Sequences: 59808
Number of extensions: 677237
Number of successful extensions: 1718
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1717
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2955465848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)