Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0593
         (992 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         25   3.5  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    24   6.1  
AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    24   6.1  

>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 20/61 (32%), Positives = 25/61 (40%)
 Frame = -1

Query: 968 LYTKRGWQKPQSPXNPG*XSSPXVAXKCKXXGFQXTPGIDPAXQXPSHVNGVSDQHPSDG 789
           L T RGW  PQ+    G  SS  ++  C        P  D A    +  +G SD  PS  
Sbjct: 549 LATGRGWSSPQASPVSGYDSSTSISSVCSG------PEEDNASHSSASSHGSSD-GPSSS 601

Query: 788 E 786
           E
Sbjct: 602 E 602


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 228 LVVDAESVGFEGTRAYLGPRVRYNRSSSP 142
           + V    V F  T  YLG R+ YN S  P
Sbjct: 732 ITVGGTEVPFSRTLKYLGVRLHYNLSWVP 760


>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 198 RNQRSQRQQPALPSQLHVDP 257
           + QRSQ+++PA P  + V P
Sbjct: 484 QQQRSQQRKPAKPELIEVSP 503


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,053,719
Number of Sequences: 2352
Number of extensions: 22420
Number of successful extensions: 29
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 65
effective length of database: 411,099
effective search space used: 108941235
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)