Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0593
         (992 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021497-2|CAA16400.1|  606|Caenorhabditis elegans Hypothetical ...    44   1e-04
U64835-7|AAG24198.2|  427|Caenorhabditis elegans Hypothetical pr...    35   0.10 
Z46381-4|CAA86519.2|  604|Caenorhabditis elegans Hypothetical pr...    32   0.55 
AL021497-3|CAA16405.1|  613|Caenorhabditis elegans Hypothetical ...    31   1.3  
U88184-5|AAK95876.1|  523|Caenorhabditis elegans Hypothetical pr...    29   6.8  
Z66561-4|CAA91457.2|  185|Caenorhabditis elegans Hypothetical pr...    28   9.0  

>AL021497-2|CAA16400.1|  606|Caenorhabditis elegans Hypothetical
           protein Y51A2D.4 protein.
          Length = 606

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 44/153 (28%), Positives = 68/153 (44%), Gaps = 5/153 (3%)
 Frame = +3

Query: 534 TQKLFLWTQLLAAFAVSVGSMNVGFSSGYTSPAVLTMNITLDITKEEITWVGGLCR*QLW 713
           T KL L+  +LAA +V +G    G+ +   S A+L M     +   +  W   L      
Sbjct: 18  TPKLGLFVYILAAASV-IGGFLFGYDTSVVSAAMLYMPDAPGLKPMDTVWQEVLVSISPG 76

Query: 714 SXALLA-----DFDRIPRKKKAIMGTAVPFTIXWMLIANAINV*WXLLGRVYAGCXLESX 878
             A+ +       D I R+K  I+G +  FTI  ++ A ++N    L+GRV  G  +   
Sbjct: 77  MAAVGSLMSGTSSDYIGRRK-VILGASAIFTIGALVCAASVNKIMLLVGRVLLGIAIGFA 135

Query: 879 SLAFPGYXGGTXSXGVXRALGLLPTAFGIQDTF 977
           S+  P Y G T    V    G+L  AF +  +F
Sbjct: 136 SMIVPVYLGETAPTHVR---GMLVAAFALMISF 165


>U64835-7|AAG24198.2|  427|Caenorhabditis elegans Hypothetical
           protein T09D3.4 protein.
          Length = 427

 Score = 34.7 bits (76), Expect = 0.10
 Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
 Frame = +2

Query: 359 TFNNYVRSV*ETNSNTKWKWKSRTRTCGILFHSLGN*AQT----ALKLRRNTITGWNTVQ 526
           T++ +V+ + E  +N     K + R C +  H +    QT    A   RR  +       
Sbjct: 41  TYDQHVQFLPEIENNGP---KQKCRVCNLEAHGMHFGVQTCRPCAAFFRRIVVLDLKYTC 97

Query: 527 IYNSETVSMDAASCSVCSFCRFNECRIFIWVHITCCANNEYNFGHNKGRNNMGWG 691
           + N++  ++D    +VC  CR+ +C   I V +T   N +YN   +  +N+ G G
Sbjct: 98  VSNTQKCNVDGRGRNVCRDCRYKKC---IAVGMT-TDNVQYNRDSHNNKNSSGSG 148


>Z46381-4|CAA86519.2|  604|Caenorhabditis elegans Hypothetical
           protein M01F1.5 protein.
          Length = 604

 Score = 32.3 bits (70), Expect = 0.55
 Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 5/121 (4%)
 Frame = +3

Query: 552 WTQLLAAFAVSVGSMNVGFSSGYTSPAVLTMNITLDITKEEITWVGGLCR*Q-----LWS 716
           W   + AF+  +G    G+ +G  S A+L +     I   +  W   +         + S
Sbjct: 26  WFVYMLAFSAVIGGFLFGYDTGIVSAAMLYVPNASGIKPLDSVWQEIIVSITPGVAAIGS 85

Query: 717 XALLADFDRIPRKKKAIMGTAVPFTIXWMLIANAINV*WXLLGRVYAGCXLESXSLAFPG 896
                  D + RKK  I+G +V FTI  ++ A A      L+GR+  G  +   S+  P 
Sbjct: 86  LCSGPGSDFLGRKK-IIIGASVTFTIGAIICAAAWTKIILLIGRILLGLAIGFASMIVPI 144

Query: 897 Y 899
           Y
Sbjct: 145 Y 145


>AL021497-3|CAA16405.1|  613|Caenorhabditis elegans Hypothetical
           protein Y51A2D.5 protein.
          Length = 613

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 39/162 (24%), Positives = 62/162 (38%), Gaps = 7/162 (4%)
 Frame = +3

Query: 513 GTPYKSTTQKLFLWTQLLAAFAVSVGSMNVGFSSGYTSPAVLTMNITLDITKEEITW--- 683
           G P      KL  +  LL + A+ +G    G+ +   S A+L +     +      W   
Sbjct: 12  GRPRPEKNPKLGFFVYLLGSAAI-IGGFLFGYDTSVVSAAMLYVPEAPGLKPMGTVWKEV 70

Query: 684 ----VGGLCR*QLWSXALLADFDRIPRKKKAIMGTAVPFTIXWMLIANAINV*WXLLGRV 851
                 G+     W     A  DR  RK   I+G+ + F    ++ A A      L+GR+
Sbjct: 71  IVSITPGMAAVGAWFSG--AGSDRYGRKP-IIIGSTLIFVCGAVICAVAWTKIVMLIGRI 127

Query: 852 YAGCXLESXSLAFPGYXGGTXSXGVXRALGLLPTAFGIQDTF 977
           + G  +   S+  P Y G      V    G L +AF +  +F
Sbjct: 128 FLGVGIGFASMVVPVYLGEASPTHVR---GTLVSAFAMMISF 166


>U88184-5|AAK95876.1|  523|Caenorhabditis elegans Hypothetical
           protein F36H5.11 protein.
          Length = 523

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +1

Query: 346 KTRRHFQQLRQISLGNEFKYKMEMEIKDENLRNSVPFVRQLSTDSVKTKTEYDNGMEHR- 522
           K  RH   + Q+S   E   +  ++   E    +   + +L   S++   +YD    +R 
Sbjct: 293 KVLRHMDPISQLSFRREMSLRQWIDHFME--LTTAKHIYELILSSIEKIHKYDLKGFYRS 350

Query: 523 -TNLQLRNCFYGR 558
            T L +RNCFY R
Sbjct: 351 LTGLPIRNCFYDR 363


>Z66561-4|CAA91457.2|  185|Caenorhabditis elegans Hypothetical
           protein F08G12.5 protein.
          Length = 185

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +1

Query: 400 KYKMEMEIKDENLRNSVPFVRQLSTDSVKTKTEYDNGMEHRTNLQLR 540
           +  M   I++  L+N +  + +LS +  K++  YDN ++  +N QLR
Sbjct: 93  RVSMSKVIQNYTLKNVLDSINELSREEEKSRRAYDNTLD-ASNEQLR 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,859,822
Number of Sequences: 27780
Number of extensions: 487863
Number of successful extensions: 1200
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2594635024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)