Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0591
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    29   0.82 
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    26   4.4  
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    26   5.8  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    26   5.8  
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.6  

>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 632 RVMVHVVGHRPDRRFFALGRWSPRSLIVDSCSK 534
           + +V +    PD +FF +  W P  L + SC K
Sbjct: 210 KFLVKLAKALPDAKFFGIFDWDPHGLCIYSCFK 242


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/66 (22%), Positives = 29/66 (43%)
 Frame = +2

Query: 434 IFVKSAHFLTNRPKSAKSLINXKNRRDRVECVPVWNKSPLLKNVDSNVQGRKTVYQGDGP 613
           I VK  HF +++ K  +      ++RD +E    ++ S L  +  + VQ   ++      
Sbjct: 124 ILVKDNHFFSHKQKKIQRESIPFHKRDNIETSDAYSSSILENSPPNKVQRLSSLDSSQDS 183

Query: 614 LREPSP 631
            +E  P
Sbjct: 184 FQEEHP 189


>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 162 YRVYLLRDHFAPTDPSPVRGDKQNVSIYICL 70
           Y +Y++ D     D +  RGD+Q+ SI + L
Sbjct: 442 YDIYMIGDEDPDVDAAVYRGDQQDDSILLSL 472


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 386 PFXCATVGKGDRCGPLRYYASWRKGDV 306
           P  C  V  G R GP   Y +W+  DV
Sbjct: 392 PKVCLFVRNGARLGPTSIYHAWKAFDV 418


>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 473 KSAKSLINXKNRR-DRVECVPVWNKSP 550
           K  KS  + K RR  R+  V VWN+SP
Sbjct: 46  KPIKSTSDRKRRRHSRMSIVNVWNQSP 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,819,407
Number of Sequences: 5004
Number of extensions: 58618
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)