Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0591
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   4.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.7  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    21   8.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.2  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    21   8.2  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 3   NNYRYNHKK*TK*HYICDPLLNI 71
           NNY+YN+    K  Y  + ++NI
Sbjct: 327 NNYKYNYNNYNKKLYYKNYIINI 349


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 248 RFKRRDWENPGVTQLNRLAAHPPF 319
           RFKR  +E P V ++++  + P F
Sbjct: 608 RFKRGKYEEPTVGEISQDGSSPHF 631


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 191 PRK*LYICDAIVFIYYVITSRQRTLLPCEA 102
           PR  L IC  +VF+  +I      + P +A
Sbjct: 765 PRSQLIICSGLVFVQILINGVWMIIDPAKA 794


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 297 ALQHIPLSPAGVIAKRPAPIALPNSC 374
           AL   P  P G   K  AP+ L  +C
Sbjct: 55  ALGEAPCDPVGRRLKSLAPLVLRGAC 80


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 252 KRRPVNCNTTHYRANWVPGP 193
           K++P +C+T  YR   V  P
Sbjct: 565 KKQPSDCDTLEYRNGEVTTP 584


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 297 ALQHIPLSPAGVIAKRPAPIALPNSC 374
           AL   P  P G   K  AP+ L  +C
Sbjct: 55  ALGEAPCDPVGRRLKSLAPLVLRGAC 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,598
Number of Sequences: 438
Number of extensions: 4818
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)