Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0591
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g12890.1 68418.m01479 UDP-glucoronosyl/UDP-glucosyl transfera...    28   4.9  
At2g01540.1 68415.m00078 C2 domain-containing protein similar to...    28   4.9  
At1g45207.2 68414.m05186 remorin family protein Since this genom...    28   4.9  
At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger) fa...    28   6.5  
At1g27020.1 68414.m03294 expressed protein                             27   8.6  

>At5g12890.1 68418.m01479 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 488

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 515 RVECVPVWNKSPLLKNVDSNVQGRKT 592
           R+  VPVW   P+LK+ D  V  R T
Sbjct: 244 RITGVPVWPVGPVLKSPDKKVGSRST 269


>At2g01540.1 68415.m00078 C2 domain-containing protein similar to
           zinc finger and C2 domain protein GI:9957238 from
           [Arabidopsis thaliana]
          Length = 180

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 500 KNRRDRVECVPVWNKSPLLKNVDSNVQGRKTVYQGD 607
           K R  +  C PVWN+   +   D NV  R TV+  D
Sbjct: 41  KTRVVKKNCNPVWNEEMTVAIKDPNVPIRLTVFDWD 76


>At1g45207.2 68414.m05186 remorin family protein Since this genomic
           sequence region is unfinished, the annotated gene may be
           missing a stop codon or start codon
          Length = 555

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 22/77 (28%), Positives = 38/77 (49%)
 Frame = -3

Query: 417 QNINAYNLPFAIQXRNCWEGRSVRASSLLRQLAKGGCAARRLSWVTPGFSQSRRLKRRPV 238
           QN+++    F++  R C E RS R+ +L ++L      +  LS VT    +   +KR  V
Sbjct: 118 QNLDSARSSFSVALRECQERRS-RSEALAKKLDYQRTVSLDLSNVTSTSPRVVNVKRASV 176

Query: 237 NCNTTHYRANWVPGPPS 187
           + N +    +  PG P+
Sbjct: 177 STNKSSVFPS--PGTPT 191


>At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger)
           family protein similar to C-terminal zinc-finger
           [Glycine max] GI:558543; contains Pfam profile: PF00097
           zinc finger, C3HC4 type (RING finger)
          Length = 486

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 567 TPTSKGEKPSIRAMAHYVNHHP 632
           T +S+   PS+    HY++HHP
Sbjct: 260 TSSSRNPTPSVYQRNHYISHHP 281


>At1g27020.1 68414.m03294 expressed protein
          Length = 308

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 266 WENPGVTQLNRLAAHPPFASW 328
           WE P  T  N+LA    FA+W
Sbjct: 163 WEKPTSTDFNQLAKESEFAAW 183


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,815,065
Number of Sequences: 28952
Number of extensions: 313263
Number of successful extensions: 637
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)