Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0588
         (523 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      25   5.2  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    25   6.8  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    25   9.0  
SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1 ...    25   9.0  
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    25   9.0  

>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 155 DYDSAVERSKLIYTDNKGELITNVVNNLIRXNKRTAWSTPTS 280
           D D   + SKL Y D +G+  TN  N+L    + +  S P+S
Sbjct: 115 DEDDNGKYSKLRYEDIEGQEDTNQANDLDADEEGSEISVPSS 156


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +2

Query: 209 ELITNVVNNLIRXNKRTA--WSTPTSSGCKAPRTSSGDCFPVEFTLILAENY 358
           EL TNVVNN+    ++T   W     +  K  RT     +      I++ENY
Sbjct: 757 ELRTNVVNNVFENWRQTGIFWEQYDPTTGKGQRTKDFTGWTSLVVNIMSENY 808


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 249 TRELHGVRLPALDARLRGHRPGI 317
           T ++H      L+ARL GH+ G+
Sbjct: 372 TIQIHNAITGVLEARLEGHKEGV 394


>SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 359 VKLMYRRDGLAFTLSDNGGVAYGDSKDR 442
           ++L+Y    +AF +   GG+A  D  DR
Sbjct: 289 LRLLYECFPMAFLVEQAGGIAVNDKGDR 316


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 452 RVSWKFIPLWENNKVYFKI 508
           R SW+  PLW   K+Y K+
Sbjct: 308 RKSWETYPLWVQVKLYEKV 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,912,907
Number of Sequences: 5004
Number of extensions: 34750
Number of successful extensions: 76
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)