Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0588
(523 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1381 - 26551920-26552053,26552963-26553070,26553154-265533... 30 1.3
11_01_0596 + 4755453-4755490,4755675-4756047,4757739-4758940,475... 28 5.2
11_01_0459 + 3546101-3548771,3548871-3549238 27 6.9
10_06_0130 - 11055305-11055593,11055666-11055949,11057271-110573... 27 9.1
09_04_0676 - 19383757-19383890,19384308-19384415,19384493-193846... 27 9.1
05_07_0118 + 27811125-27811180,27811724-27811733,27814651-278147... 27 9.1
05_06_0071 + 25355853-25356095,25356183-25356239,25356848-253570... 27 9.1
03_04_0182 - 18196447-18196482,18197058-18197149,18197262-18197544 27 9.1
01_06_0742 - 31611005-31611843,31611930-31612092,31613463-316135... 27 9.1
01_06_0205 - 27495030-27495128,27495397-27496265,27496352-274965... 27 9.1
>08_02_1381 -
26551920-26552053,26552963-26553070,26553154-26553340,
26554107-26554316
Length = 212
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 311 GDCFPVEFTLILAENYVKLMYRRDGLAFTLSDNGGVAYGDSKDRTSSR 454
GD V F +I A+ Y DG+ + D G DS+D+TS +
Sbjct: 44 GDTVHVSFVVIKADT--PWHYSEDGVDLVVKDPNGAQVRDSRDKTSDK 89
>11_01_0596 +
4755453-4755490,4755675-4756047,4757739-4758940,
4759026-4759392
Length = 659
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 295 SLASRAGRRTPCSSLVVSYQIVYD 224
SLA+R GR TPC + + Y+ ++D
Sbjct: 422 SLATRLGRITPCRAQIEWYKALFD 445
>11_01_0459 + 3546101-3548771,3548871-3549238
Length = 1012
Score = 27.5 bits (58), Expect = 6.9
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +3
Query: 291 RLRGHRPGIVSRLSSHLS*LKTMLSLCTGETVS-LLH*ATMAGLPTGTAK-TGPVQESAG 464
RL GH P +S S+HL L + +G S + H + + L GT TG + E G
Sbjct: 353 RLEGHLPSSLSNFSTHLQRLHLYGNEISGFLPSGIEHLSNLIDLSLGTNDFTGTLPEWLG 412
Query: 465 N 467
N
Sbjct: 413 N 413
>10_06_0130 -
11055305-11055593,11055666-11055949,11057271-11057398,
11058522-11058606,11058917-11060872
Length = 913
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -1
Query: 151 NYDVIVKISARISLKAVPSSAYRDAAKRHRTTTADFIFGAPASLVPR 11
+Y+V++ + AR A + YR R R F FG A + R
Sbjct: 141 SYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVAARALCR 187
>09_04_0676 -
19383757-19383890,19384308-19384415,19384493-19384679,
19384937-19385143
Length = 211
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +2
Query: 311 GDCFPVEFTLILAENYVKLMYRRDGLAFTLSDNGGVAYGDSKDRTSSR 454
GD V F +I AE Y DG+ + D G DS+D+ S +
Sbjct: 43 GDTVHVSFVVIKAET--PWHYTEDGVDLVVRDPNGNQIHDSRDKISDK 88
>05_07_0118 +
27811125-27811180,27811724-27811733,27814651-27814707,
27814816-27814986,27815101-27815185,27815811-27815901,
27815975-27816139,27816563-27816682,27816774-27816846,
27817725-27817884,27817968-27818833,27819143-27819229
Length = 646
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 257 TAWSTPTSSGCKAPRTSSGDCFP 325
TA T T G PR ++ DCFP
Sbjct: 74 TASDTSTHGGFSVPRRAAEDCFP 96
>05_06_0071 +
25355853-25356095,25356183-25356239,25356848-25357069,
25357143-25357227,25357993-25358083,25358172-25358336,
25358583-25358699,25358773-25358848,25359940-25360102,
25360184-25361064
Length = 699
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 257 TAWSTPTSSGCKAPRTSSGDCFP 325
TA T T G PR ++ DCFP
Sbjct: 138 TASDTSTHGGFSVPRRAAEDCFP 160
>03_04_0182 - 18196447-18196482,18197058-18197149,18197262-18197544
Length = 136
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +2
Query: 209 ELITNVVNNLIRXNKRTAWSTPTSSGCKAPRTSSGDCFPVEFTLILAENYV 361
E + +V L TA +TP S+ P T + FP ++ L +++
Sbjct: 55 EALAALVRELSSAAPPTAATTPASTATAVPSTKAASLFPSDYFLAATRSWL 105
>01_06_0742 -
31611005-31611843,31611930-31612092,31613463-31613538,
31613615-31613731,31613852-31614016,31614100-31614190,
31614824-31614908,31615013-31615195,31615748-31615996
Length = 655
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 257 TAWSTPTSSGCKAPRTSSGDCFP 325
TA T T G PR ++ DCFP
Sbjct: 120 TASDTSTHGGFSVPRRAAEDCFP 142
>01_06_0205 -
27495030-27495128,27495397-27496265,27496352-27496511,
27497136-27497208,27497311-27497430,27498454-27498618,
27498695-27498785,27499381-27499465,27499555-27499740,
27499843-27499899,27499998-27500282
Length = 729
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 257 TAWSTPTSSGCKAPRTSSGDCFP 325
TA T T G PR ++ DCFP
Sbjct: 152 TASDTSTHGGFSVPRRAAEDCFP 174
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,036,362
Number of Sequences: 37544
Number of extensions: 246925
Number of successful extensions: 715
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -