Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0588
         (523 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29759| Best HMM Match : ABC_tran (HMM E-Value=0)                    30   1.0  
SB_22988| Best HMM Match : RVT_1 (HMM E-Value=5.70328e-43)             29   3.1  
SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)            27   9.4  
SB_19176| Best HMM Match : YGGT (HMM E-Value=1.1)                      27   9.4  

>SB_29759| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1308

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 18/72 (25%), Positives = 33/72 (45%)
 Frame = +2

Query: 125 GDLYNDVIIADYDSAVERSKLIYTDNKGELITNVVNNLIRXNKRTAWSTPTSSGCKAPRT 304
           G +Y  +I +   + +       TD +  L+  ++N  IR  K  AW  P+S   K  R 
Sbjct: 209 GIIYKKIIGSRQSAGIRLQGSRITDRRITLVREIING-IRTVKMHAWEKPSSDIVKRTRK 267

Query: 305 SSGDCFPVEFTL 340
           +  + + + FT+
Sbjct: 268 AEVNKYRLMFTI 279


>SB_22988| Best HMM Match : RVT_1 (HMM E-Value=5.70328e-43)
          Length = 1029

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -1

Query: 217  DELTLVIGVD*FASFNSRVVISNYDVIVKISARISLKAVPSSAYRD 80
            ++L+L I    F  F+    ISNY + +KI+ +   K  P S +RD
Sbjct: 910  NKLSLNIDKTNFIIFHPPQKISNYTLSIKINGKCIKKEKPLSVFRD 955


>SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)
          Length = 1197

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 238  DTXQQENCMEYAYQLWMQGSEDIVRGLFP 324
            D   QEN +   YQLW+ G+ D    L P
Sbjct: 920  DPPPQENILNSMYQLWILGALDNTGSLTP 948


>SB_19176| Best HMM Match : YGGT (HMM E-Value=1.1)
          Length = 409

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -1

Query: 199 IGVD*FASFNSRVVISNYDVIVKISARISLKAVPSSAYRDAAKRHRTTTADFIFGAP 29
           +G   + SF   +      V++ +   I L     S +  AAK   TT AD+IF  P
Sbjct: 291 LGWQRYVSFKGNLYCGGVTVLLVVIEIIHLSLF-GSPFNYAAKMPTTTDADYIFSLP 346


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,163,988
Number of Sequences: 59808
Number of extensions: 292717
Number of successful extensions: 783
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)