Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0588
         (523 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    24   3.6  
AF532982-1|AAQ10289.1|  459|Anopheles gambiae putative RNA methy...    23   4.7  
AY146751-1|AAO12066.1|  277|Anopheles gambiae odorant-binding pr...    23   8.2  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.8 bits (49), Expect = 3.6
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +2

Query: 341 ILAENYVKLMYRRDGLAFTLSDNGGVAYGD--SKDRTSSRVSWKFIPLWENNKVYFKIR 511
           +LA  + +L+  +  L  T+SD      GD  SK+R    +    I + E  K   ++R
Sbjct: 290 VLATEHQQLLREKTKLDLTISDLSDEVQGDNKSKERAEQELERLKITIAEKEKELEQVR 348


>AF532982-1|AAQ10289.1|  459|Anopheles gambiae putative RNA
           methylase protein.
          Length = 459

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 107 LQRNPGGDLYNDVIIADYDSAVERSKLIY 193
           LQ+   G L+ DV+IAD+  ++    +++
Sbjct: 276 LQQYGCGGLFVDVLIADFSRSIWADSIVF 304


>AY146751-1|AAO12066.1|  277|Anopheles gambiae odorant-binding
           protein AgamOBP36 protein.
          Length = 277

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -3

Query: 320 NNPRTMSSEPCIQSW*AYSMQF 255
           N P+  + EPC+Q++ A+   +
Sbjct: 113 NLPQECNGEPCVQAYRAFQCYY 134


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 502,224
Number of Sequences: 2352
Number of extensions: 9258
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 47783067
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)