Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0588
         (523 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81562-9|CAN99693.1| 1376|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z81474-10|CAN99685.1| 1376|Caenorhabditis elegans Hypothetical p...    28   4.7  
Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z66499-3|CAA91300.1|  348|Caenorhabditis elegans Hypothetical pr...    27   6.2  
M34451-1|AAA28143.1|  348|Caenorhabditis elegans protein ( C.ele...    27   6.2  

>Z81562-9|CAN99693.1| 1376|Caenorhabditis elegans Hypothetical protein
            C18D4.2b protein.
          Length = 1376

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/54 (33%), Positives = 30/54 (55%)
 Frame = +2

Query: 149  IADYDSAVERSKLIYTDNKGELITNVVNNLIRXNKRTAWSTPTSSGCKAPRTSS 310
            + D D   E S+  + ++   L+ NV NN+IR ++ T  S+ + S CK  +T S
Sbjct: 1302 VPDNDPDSEDSRR-HKEHFQNLLLNV-NNMIRHSRITQNSSDSKSNCKKEQTGS 1353


>Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical protein
            C18D4.2a protein.
          Length = 1817

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/54 (33%), Positives = 30/54 (55%)
 Frame = +2

Query: 149  IADYDSAVERSKLIYTDNKGELITNVVNNLIRXNKRTAWSTPTSSGCKAPRTSS 310
            + D D   E S+  + ++   L+ NV NN+IR ++ T  S+ + S CK  +T S
Sbjct: 1302 VPDNDPDSEDSRR-HKEHFQNLLLNV-NNMIRHSRITQNSSDSKSNCKKEQTGS 1353


>Z81474-10|CAN99685.1| 1376|Caenorhabditis elegans Hypothetical
            protein C18D4.2b protein.
          Length = 1376

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/54 (33%), Positives = 30/54 (55%)
 Frame = +2

Query: 149  IADYDSAVERSKLIYTDNKGELITNVVNNLIRXNKRTAWSTPTSSGCKAPRTSS 310
            + D D   E S+  + ++   L+ NV NN+IR ++ T  S+ + S CK  +T S
Sbjct: 1302 VPDNDPDSEDSRR-HKEHFQNLLLNV-NNMIRHSRITQNSSDSKSNCKKEQTGS 1353


>Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical protein
            C18D4.2a protein.
          Length = 1817

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/54 (33%), Positives = 30/54 (55%)
 Frame = +2

Query: 149  IADYDSAVERSKLIYTDNKGELITNVVNNLIRXNKRTAWSTPTSSGCKAPRTSS 310
            + D D   E S+  + ++   L+ NV NN+IR ++ T  S+ + S CK  +T S
Sbjct: 1302 VPDNDPDSEDSRR-HKEHFQNLLLNV-NNMIRHSRITQNSSDSKSNCKKEQTGS 1353


>Z66499-3|CAA91300.1|  348|Caenorhabditis elegans Hypothetical
           protein T01B7.7 protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 18  TKEAGAPKMKSAVVVLCLF-AASLYADEGTAFNEILAEI 131
           T  +GA     A +++ LF AASLY+     +NE+ AEI
Sbjct: 5   TATSGAIVFSGATLLVSLFAAASLYSQVSNIWNELDAEI 43


>M34451-1|AAA28143.1|  348|Caenorhabditis elegans protein (
           C.elegans collagen (rol-6) gene, complete cds. ).
          Length = 348

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 18  TKEAGAPKMKSAVVVLCLF-AASLYADEGTAFNEILAEI 131
           T  +GA     A +++ LF AASLY+     +NE+ AEI
Sbjct: 5   TATSGAIVFSGATLLVSLFAAASLYSQVSNIWNELDAEI 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,947,043
Number of Sequences: 27780
Number of extensions: 211364
Number of successful extensions: 554
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)