Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0588
         (523 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g63330.1 68416.m07125 protein kinase family protein contains ...    29   2.5  
At4g20850.1 68417.m03025 subtilase family protein contains simil...    28   3.3  
At1g67490.1 68414.m07686 alpha-glucosidase I (GCS1) / KNOPF (KNF...    28   4.4  
At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) simil...    27   5.8  
At5g03200.1 68418.m00268 zinc finger (C3HC4-type RING finger) fa...    27   5.8  
At4g39510.1 68417.m05587 cytochrome P450 family protein contains...    27   5.8  
At2g29060.1 68415.m03532 scarecrow transcription factor family p...    27   5.8  
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-...    27   7.7  
At4g29905.1 68417.m04255 expressed protein                             27   7.7  
At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN ...    27   7.7  
At1g27320.1 68414.m03328 histidine kinase (AHK3) identical to hi...    27   7.7  

>At3g63330.1 68416.m07125 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 376

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = +2

Query: 134 YNDVIIADYDSAVERSKLIYTDNKGELITNVV-----NNLIRXNKRTAWSTPTSSG 286
           YND+ +  +   V  SKL+YT  + E+ +          ++R +K   W   T SG
Sbjct: 68  YNDIWLVFHHEGVSLSKLMYTVEEAEISSEKAEEASHGQILRPSKWWTWLKTTESG 123


>At4g20850.1 68417.m03025 subtilase family protein contains
           similarity to Tripeptidyl-peptidase II (EC 3.4.14.10)
           (TPP-II) (Tripeptidyl aminopeptidase)
           (Swiss-Prot:P29144) [Homo sapiens]
          Length = 1380

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 128 LRQDFVEGCAFVGVQRRREKTQDNNSGLHLRSAGFFGSSC 9
           L +DF+    F+  +R R ++   + G+ LR +GF    C
Sbjct: 32  LPRDFISSSTFLLHRRLRRRSCSRSRGIRLRRSGFSAMPC 71


>At1g67490.1 68414.m07686 alpha-glucosidase I (GCS1) / KNOPF (KNF)
           identical to alpha-glucosidase I (GI:16506680,
           GI:13398928) [Arabidopsis thaliana]
          Length = 852

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 173 ERSKLIYTDNKGELITNVVNN 235
           E+SK IYT+ +  LI NVV N
Sbjct: 790 EKSKAIYTELRSNLIRNVVRN 810


>At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) similar
           to COP1-interacting protein 4 (CIP4) [Arabidopsis
           thaliana] GI:13160646; supporting cDNA
           gi|13160645|dbj|AB036832.1|;
          Length = 876

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -1

Query: 172 NSRVVISNY-DVIVKISARISLKAVPSSAYRDAAKRHRTTTADFIFGAPA 26
           NS+V ++N  +V+ KIS  ++   + ++ ++DA +    TT+     AP+
Sbjct: 752 NSKVNVNNKKEVVKKISNSVTANKITTNFFKDAEEDESKTTSSDSSNAPS 801


>At5g03200.1 68418.m00268 zinc finger (C3HC4-type RING finger)
           family protein contains weak similarity to zinc finger
           proteins
          Length = 337

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 170 VERSKLIYTDNKGELITNVVNNLIRXNKR 256
           V+ ++++YT  KGE+   VV  ++  NKR
Sbjct: 234 VQITQVVYTKEKGEIKIEVVKQILWVNKR 262


>At4g39510.1 68417.m05587 cytochrome P450 family protein contains
           Pfam PF00067: Cytochrome P450; similar to  Cytochrome
           P450 86A2 (SP:O23066) [Arabidopsis thaliana]
          Length = 508

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +2

Query: 434 KDRTSSRVSWKFIPLWENNKVYFKIR 511
           +D TSS +SW F  L EN +V  KIR
Sbjct: 313 RDTTSSALSWFFWLLSENPQVVTKIR 338


>At2g29060.1 68415.m03532 scarecrow transcription factor family
           protein 
          Length = 1336

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +2

Query: 386 LAFTLSDNGGVAYGDSKDRTSSRVSWKFIPLWENNK 493
           LA  +S  GG +Y  S   TSS   W F  L ENN+
Sbjct: 116 LAQLVSSPGGSSYASSTTTTSSDSQWSFDCL-ENNR 150


>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
           RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
           contains Pfam profiles PF04408: Helicase associated
           domain (HA2), PF00271: Helicase conserved C-terminal
           domain
          Length = 1226

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 238 DTXQQENCMEYAYQLWMQGSEDIVRGL 318
           D   QEN +   YQLW+ G+ + V GL
Sbjct: 915 DPPPQENILNSMYQLWVLGALNNVGGL 941


>At4g29905.1 68417.m04255 expressed protein
          Length = 67

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 364 LNIVFS*DKCELNRETIPGRCP 299
           L +V+  +K EL R+  PG CP
Sbjct: 3   LEVVYHEEKTELGRQQAPGMCP 24


>At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN
           protein (ETT) identical to ETTIN GB:AF007788 from
           [Arabidopsis thaliana]
          Length = 608

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 257 TAWSTPTSSGCKAPRTSSGDCFP 325
           TA  T T  G   PR ++ DCFP
Sbjct: 164 TASDTSTHGGFSVPRRAAEDCFP 186


>At1g27320.1 68414.m03328 histidine kinase (AHK3) identical to
           histidine kinase AHK3 [Arabidopsis thaliana]
           gi|13537198|dbj|BAB40775
          Length = 1036

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +2

Query: 161 DSAVERSKLIYTDNKGELITNVVNNLIRXNKRTAWSTPTSSGCKAPRTS 307
           D+ +E    +   + G+L    +  L + NK   W+  +SSG K P  S
Sbjct: 30  DNGIEDKSGLLVGSVGDLEKTKMTTLKKKNKMWFWNKISSSGLKIPSFS 78


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,286,903
Number of Sequences: 28952
Number of extensions: 192617
Number of successful extensions: 579
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)