Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0587
(765 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 63 4e-11
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 35 0.015
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 32 0.078
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 31 0.18
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.73
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 28 1.3
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 27 2.2
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 27 2.9
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 27 2.9
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 27 3.9
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc... 27 3.9
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 26 5.1
SPAC644.08 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 26 5.1
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 26 5.1
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 26 6.8
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 26 6.8
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|... 26 6.8
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 25 9.0
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 9.0
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 63.3 bits (147), Expect = 4e-11
Identities = 32/59 (54%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Frame = +2
Query: 539 THLYTLIVKPDNTYEVLIDNEKVESGDLEADW--DFLPPKKIKDPEAKKPEDWDDKPTI 709
T+LYTLIVKPD T+EV I+ + V G L D+ LPP +I DPE KP DW D+P I
Sbjct: 201 TNLYTLIVKPDQTFEVRINGDVVRQGSLFYDFIPPVLPPVEIYDPEDIKPADWVDEPEI 259
Score = 60.9 bits (141), Expect = 2e-10
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Frame = +3
Query: 258 YALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFG 434
+A+S +F +P + K LVVQ+ V E+ ++CGG YLK+ + +M Y IMFG
Sbjct: 101 HAISYEFDEPINEPEKDLVVQYEVNPEEGLNCGGAYLKLL-AEPTHGEMSNSIDYRIMFG 159
Query: 435 PDICGPGTKKVHVIFSYK 488
PD CG +VH IF +K
Sbjct: 160 PDKCGV-NDRVHFIFKHK 176
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 629 DWDFLPPKKIKDPEAKKPEDW-DDKPTISRTPKTR 730
DWD P+ I DP+A KPEDW +D+P P+ +
Sbjct: 269 DWDEDAPRMIPDPDAVKPEDWLEDEPLYIPDPEAQ 303
Score = 36.7 bits (81), Expect = 0.004
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = +2
Query: 629 DWDFLPPKKIKDPEAKKPEDWDDK 700
DW P I DPEA+KPEDWDD+
Sbjct: 288 DWLEDEPLYIPDPEAQKPEDWDDE 311
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 34.7 bits (76), Expect = 0.015
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Frame = -2
Query: 281 FELTGESIE-LASSEVFKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHE-SSGNFS 108
+ +T S E SSE F S+S SL P VN + S + ++ L S + S+ NF+
Sbjct: 466 YSVTPTSAENYTSSEAF---STSSSLVVIPPVNSSLVTSSTSFTKFSSLSSSQLSTENFT 522
Query: 107 SKNTSQFIEDNASKLTTTSTT 45
S ++S + + S L+T STT
Sbjct: 523 SASSSLSLTNAKSSLSTPSTT 543
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 32.3 bits (70), Expect = 0.078
Identities = 21/64 (32%), Positives = 29/64 (45%)
Frame = +3
Query: 303 PLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFS 482
P+V+ F VK + CG Y+ + + K++ E P I FG CG I S
Sbjct: 103 PIVLSFQVKPTKPWTCGHAYVSLVH-QSNPKNVSKEPPSVIRFGVKKCGMFDYISLSIIS 161
Query: 483 YKGK 494
Y GK
Sbjct: 162 YDGK 165
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 31.1 bits (67), Expect = 0.18
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Frame = -2
Query: 281 FELTGESIELASS---EVFKPLSSSGSLKNFPAVNLNFPNSFP 162
F+LTGES ++S E F+P + SL N P +N ++ ++ P
Sbjct: 674 FKLTGESSNGSNSTPNEAFQPFDQTSSLYNVPGLNKSYVSNQP 716
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 29.1 bits (62), Expect = 0.73
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 608 ESGDLEADWDFLPPKKIKDPEAKKPEDWDDKP 703
E L+ LP + K P AKKPED++ P
Sbjct: 157 EKNTLDLKHCLLPSPEYKAPPAKKPEDYEASP 188
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -2
Query: 188 NLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTT 57
N N F + + S +SGNFS T Q DN S +T
Sbjct: 575 NSNSQRPFSTVPSESNVFSRNASGNFSMSQTHQPTTDNTSSFST 618
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 27.5 bits (58), Expect = 2.2
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Frame = +2
Query: 494 EPSHQKDIRC--KDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDL-EADWDFLPPKKIKD 664
EP +++I K + L T I + ++ + + + K+E+ +L E D F+ ++ +
Sbjct: 140 EPDSEEEIDSPTKKKSFKSLDTSIFQAEDQFRHPVSS-KLENSELSEVDKPFIASRRSRK 198
Query: 665 P----EAKKPEDWDDKPT 706
P E+ + ED+DD PT
Sbjct: 199 PVSYAESDEDEDFDDAPT 216
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/45 (24%), Positives = 19/45 (42%)
Frame = +2
Query: 569 DNTYEVLIDNEKVESGDLEADWDFLPPKKIKDPEAKKPEDWDDKP 703
D E+ ++N ++ + WD PP + K+ WD P
Sbjct: 198 DKKRELELNNTEISQKPKRSRWDQAPPSVTQVSTTKRRSRWDKAP 242
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = -2
Query: 308 QGFTLITERFELTGESIELASSEVFKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSH 129
+ + L+ R SI+ S + LS+ LK +++ FP SFP +Y + +
Sbjct: 116 KSYCLVDLRMRAIFLSIDEISMICIRILSAEERLKTGRSIDSGFPFSFPVHLIYDMCILN 175
Query: 128 ESS 120
+SS
Sbjct: 176 DSS 178
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +1
Query: 109 EKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDAS 255
+ F +D + +W EH K ++ + + FS+ DD+ + SE ++
Sbjct: 49 QAFQEDEGDEDWEEEEHKPKAKRRYNTRSNESFSE-GDDEPFEVSESSA 96
>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 539
Score = 26.6 bits (56), Expect = 3.9
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +1
Query: 208 SDPEDDKGLKTSEDASSMLSPVSSNRSVMRVNPW*SSSLSNMNKTLTVEADTS 366
S+PE++K LKT E + + SPV+ + + N S++ S ++ + T+
Sbjct: 486 SEPENEKKLKTEETSKTDDSPVTDAKPDVTSNGEPSTATSESKDSVLEPSSTT 538
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 26.2 bits (55), Expect = 5.1
Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 1/136 (0%)
Frame = -2
Query: 479 EDYVYLLGSRTTNVRAEHNLIWSLSVHVLL-LQFAVKDLEVSASTVNVLFMFDSELDYQG 303
ED V G + + HNL+ S+ L ++D V T N+ +++LD+
Sbjct: 154 EDEVINEGLESEIDGSSHNLLDSILQKCLASTSVLMQDALVYIGTANMSTRLEAKLDFMS 213
Query: 302 FTLITERFELTGESIELASSEVFKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHES 123
F+ + +I + + +P+S S + + P + S S + ++
Sbjct: 214 FSSVKSNSTSRLLNINGITVSMVRPISKSNAGSSSPPRSEESFVSMDSSSSIVEGFENDL 273
Query: 122 SGNFSSKNTSQFIEDN 75
S + + N S I N
Sbjct: 274 SPSQVTLNESSIISSN 289
>SPAC644.08 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 26.2 bits (55), Expect = 5.1
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +3
Query: 573 TPMKSSLTMRKLNLAT*RQTGTSFRLRKSRTLKPRNQKTGMTSPLFPE--PRRQEASGLG 746
TP ++ + +RKL+ ++ SF++ + R K + +TS LFP+ P Q + LG
Sbjct: 51 TPEEALINLRKLHAEGSKER--SFKMVQGRIWKKGYESNELTSHLFPDVVPAIQRSLQLG 108
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 26.2 bits (55), Expect = 5.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 620 LEADWDFLPPKKIKDPEAKKPEDWDD 697
++ D F+PP +I PE K +WD+
Sbjct: 94 VDEDPAFIPPARILFPEEKLSMEWDN 119
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 6.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 106 EEKFPDDSWESNWVYS 153
EEKFPD +W +W S
Sbjct: 251 EEKFPDIAWRVSWSLS 266
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 629 DWDFLPPKKIKDPEAKKPEDW 691
DWD +P ++ K EA KP DW
Sbjct: 209 DWDDVPWRE-KPLEAMKPRDW 228
>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 714
Score = 25.8 bits (54), Expect = 6.8
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = +1
Query: 223 DKGLKTSEDASSMLSPVSSNRSVMRVNPW*SSSLSNMNKTLTVEADTSRSLTANWSRRT 399
D KT D + +SS + P SSS ++ + T T + L A W R+T
Sbjct: 401 DNKSKTHLDTFEKVVDLSSKADFVEAGPSISSSGASSSAATTNSDTTEQILEAPWLRKT 459
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 25.4 bits (53), Expect = 9.0
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -3
Query: 151 CTPNCFPTNHQETSPQRIHHNLSKIMPAS*Q 59
C P FP N+QE H+ I AS Q
Sbjct: 791 CKPESFPANYQEVLDYYTHNGFRVIACASKQ 821
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/43 (23%), Positives = 25/43 (58%)
Frame = -3
Query: 616 ARFNFLIVNEDFIGVVRFHNQSVQMCVDIIFAADIFLMRWFLP 488
A+F +L++NE+ I +++ + + ++ + DI + +LP
Sbjct: 4327 AKFPYLVLNEEIIRMLKSYIKKFRLTLSSAMVPDILVPVSYLP 4369
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,440,216
Number of Sequences: 5004
Number of extensions: 77199
Number of successful extensions: 273
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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