Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0587
         (765 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin pr...   130   1e-30
AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin ...   130   1e-30
Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical pr...    68   6e-12
U80451-1|AAB37835.1|  591|Caenorhabditis elegans Dnaj domain (pr...    31   0.90 
Z47356-6|CAA87419.1|  554|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AF000195-3|AAC24268.1|  689|Caenorhabditis elegans Hmg protein 3...    29   4.8  
Z70682-8|CAA94583.2|  385|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AL132877-17|CAB60849.2|  269|Caenorhabditis elegans Hypothetical...    28   6.3  

>X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin
           protein.
          Length = 395

 Score =  130 bits (314), Expect = 1e-30
 Identities = 62/103 (60%), Positives = 77/103 (74%), Gaps = 2/103 (1%)
 Frame = +3

Query: 252 EFYALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIM 428
           +FY+ + KF K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV     +  D HGETPY +M
Sbjct: 68  KFYSRAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVM 127

Query: 429 FGPDICGPGTKKVHVIFSYKGKNHLIKK-ISAAKMMSTHICTL 554
           FGPDICGP T++VHVI +YKG+N LIKK I+      TH+ TL
Sbjct: 128 FGPDICGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTL 169



 Score =  104 bits (249), Expect = 8e-23
 Identities = 44/68 (64%), Positives = 52/68 (76%)
 Frame = +2

Query: 506 QKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKDPEAKKPE 685
           +K+I CK D  THLYTLI+  DNTYEV ID E  ++G LE DWD LP KKIKDP+AKKPE
Sbjct: 153 KKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGSLEEDWDLLPAKKIKDPDAKKPE 212

Query: 686 DWDDKPTI 709
           DWD++  I
Sbjct: 213 DWDEREYI 220



 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 28/56 (50%), Positives = 41/56 (73%)
 Frame = +1

Query: 85  INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDA 252
           ++ +V+F+E+F D SWE  WV S+H   +FG FKL+AGKFF     D+G++TS+DA
Sbjct: 13  VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDA 67



 Score = 38.7 bits (86), Expect = 0.004
 Identities = 15/24 (62%), Positives = 19/24 (79%)
 Frame = +2

Query: 629 DWDFLPPKKIKDPEAKKPEDWDDK 700
           DW+   P+ I DP+AKKPEDWDD+
Sbjct: 230 DWE--KPEHIPDPDAKKPEDWDDE 251



 Score = 33.5 bits (73), Expect = 0.17
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 697 QAHYFQNPEDKKLQDWGKPEHIP 765
           +  Y  + ED K +DW KPEHIP
Sbjct: 216 EREYIDDAEDAKPEDWEKPEHIP 238


>AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin
           protein 1 protein.
          Length = 395

 Score =  130 bits (314), Expect = 1e-30
 Identities = 62/103 (60%), Positives = 77/103 (74%), Gaps = 2/103 (1%)
 Frame = +3

Query: 252 EFYALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIM 428
           +FY+ + KF K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV     +  D HGETPY +M
Sbjct: 68  KFYSRAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVM 127

Query: 429 FGPDICGPGTKKVHVIFSYKGKNHLIKK-ISAAKMMSTHICTL 554
           FGPDICGP T++VHVI +YKG+N LIKK I+      TH+ TL
Sbjct: 128 FGPDICGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTL 169



 Score =  104 bits (249), Expect = 8e-23
 Identities = 44/68 (64%), Positives = 52/68 (76%)
 Frame = +2

Query: 506 QKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKDPEAKKPE 685
           +K+I CK D  THLYTLI+  DNTYEV ID E  ++G LE DWD LP KKIKDP+AKKPE
Sbjct: 153 KKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGSLEEDWDLLPAKKIKDPDAKKPE 212

Query: 686 DWDDKPTI 709
           DWD++  I
Sbjct: 213 DWDEREYI 220



 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 28/56 (50%), Positives = 41/56 (73%)
 Frame = +1

Query: 85  INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDA 252
           ++ +V+F+E+F D SWE  WV S+H   +FG FKL+AGKFF     D+G++TS+DA
Sbjct: 13  VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDA 67



 Score = 38.7 bits (86), Expect = 0.004
 Identities = 15/24 (62%), Positives = 19/24 (79%)
 Frame = +2

Query: 629 DWDFLPPKKIKDPEAKKPEDWDDK 700
           DW+   P+ I DP+AKKPEDWDD+
Sbjct: 230 DWE--KPEHIPDPDAKKPEDWDDE 251



 Score = 33.5 bits (73), Expect = 0.17
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 697 QAHYFQNPEDKKLQDWGKPEHIP 765
           +  Y  + ED K +DW KPEHIP
Sbjct: 216 EREYIDDAEDAKPEDWEKPEHIP 238


>Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical
           protein ZK632.6 protein.
          Length = 619

 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
 Frame = +3

Query: 246 RCEFYALSRKFK-PFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFD--CKLEQKDMHGETP 416
           +   +A++ K   PF+ +    VVQ+ +K E+  +CGGGYLK+     + +  +   +T 
Sbjct: 117 KARHHAIAAKLNTPFAFDANTFVVQYDIKFEEGQECGGGYLKLLSEGAEKDLANFQDKTA 176

Query: 417 YEIMFGPDICGPGTKKVHVIFSYK 488
           Y IMFGPD CG  T KVH+IF YK
Sbjct: 177 YTIMFGPDKCG-ATGKVHLIFRYK 199



 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
 Frame = +2

Query: 527 DDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWD--FLPPKKIKDPEAKKPEDWDDK 700
           DD  THL+TL+VKP   Y V +D + +  G++ +D      PPK+I D    KP DWD++
Sbjct: 223 DDHNTHLFTLVVKPTGEYSVSVDGKSLYYGNMMSDVTPALTPPKQIFDETDLKPVDWDER 282

Query: 701 PTI 709
             I
Sbjct: 283 ENI 285



 Score = 38.3 bits (85), Expect = 0.006
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = +2

Query: 560 VKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKDPEAKKPEDWDD 697
           VKPD+  E    +   E+     DW+    + I DPEAKKP+DWD+
Sbjct: 291 VKPDDWDENEPQSVVDEAATKPYDWNEEENELIADPEAKKPQDWDE 336



 Score = 31.1 bits (67), Expect = 0.90
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 593 DNEKVESGDLEADWDFLPPKKIKDPEAKKPEDWDDK 700
           +N + ES     DWD   P+ + D  A KP DW+++
Sbjct: 283 ENIEDESAVKPDDWDENEPQSVVDEAATKPYDWNEE 318


>U80451-1|AAB37835.1|  591|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 9 protein.
          Length = 591

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -2

Query: 287 ERFELTGESIELASSEVFKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQ 141
           E   +T  S++L +  V   +S    L  +  ++ +F  SFP C LYT+
Sbjct: 349 ENDSITEMSVQLTTYGVNPAISMDRRLSRYSRISCSFHFSFPSCLLYTK 397


>Z47356-6|CAA87419.1|  554|Caenorhabditis elegans Hypothetical
           protein T15H9.6 protein.
          Length = 554

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 683 EDWDDKPTISRTPKTRSFRIGASLNTF 763
           +DW  K TISR PK + F  G  L  F
Sbjct: 67  KDWVQKTTISRIPKDQMFNAGGKLIPF 93


>AF000195-3|AAC24268.1|  689|Caenorhabditis elegans Hmg protein 3
           protein.
          Length = 689

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = +2

Query: 563 KPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKDPEAKKPEDWDDKPTISRTPK 724
           +PD+ Y+   + +   +G+ + D + + PKK +  E K   +  +KP   +  K
Sbjct: 497 EPDDEYDSGSEKDASGTGESDPDEENIEPKKKESKEKKNKREKKEKPVKEKAVK 550


>Z70682-8|CAA94583.2|  385|Caenorhabditis elegans Hypothetical
           protein F08G5.1 protein.
          Length = 385

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = +1

Query: 148 YSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDASSMLSPVSSNRSVMRVNPW*SSSLS 327
           YS + G+      LTA +FFS P  +   + +  AS++ S + S  SV+  +   S    
Sbjct: 166 YSTNIGESSRMPALTANEFFSQPVYNPYNRPASSASTVSSSIGSAYSVLHDDSPFSGFSP 225

Query: 328 NMNKTL 345
           N N +L
Sbjct: 226 NSNHSL 231


>AL132877-17|CAB60849.2|  269|Caenorhabditis elegans Hypothetical
           protein Y105E8B.7 protein.
          Length = 269

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 536 YTHLYTLIVKPDN-TYEVLIDNEKVESGDLEADWDFLPP 649
           +TH +TL VKP N  Y+   DN+ ++    E    F  P
Sbjct: 23  HTHKWTLFVKPGNRDYDEFPDNKLIQKVKFEIHESFAQP 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,275,238
Number of Sequences: 27780
Number of extensions: 450390
Number of successful extensions: 1504
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1496
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)