Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0586
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    28   1.6  
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      26   5.0  

>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +2

Query: 209 ELITNVVNNLIRNNKRTA--WSTPTSSGCKAPRTSSGDCFPVEFTLILAENY 358
           EL TNVVNN+  N ++T   W     +  K  RT     +      I++ENY
Sbjct: 757 ELRTNVVNNVFENWRQTGIFWEQYDPTTGKGQRTKDFTGWTSLVVNIMSENY 808


>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 155 DYDSAVERSKLIYTDNKGELITNVVNNLIRNNKRTAWSTPTS 280
           D D   + SKL Y D +G+  TN  N+L  + + +  S P+S
Sbjct: 115 DEDDNGKYSKLRYEDIEGQEDTNQANDLDADEEGSEISVPSS 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,867,733
Number of Sequences: 5004
Number of extensions: 55556
Number of successful extensions: 120
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)