Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0586
         (754 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0653 - 23948911-23948937,23949031-23949141,23949361-239494...    32   0.43 
08_02_1381 - 26551920-26552053,26552963-26553070,26553154-265533...    30   2.3  
11_01_0596 + 4755453-4755490,4755675-4756047,4757739-4758940,475...    29   5.2  
09_06_0055 - 20550889-20551531,20551612-20551889,20552035-205522...    29   5.2  

>01_05_0653 -
           23948911-23948937,23949031-23949141,23949361-23949441,
           23949865-23949984,23950088-23950252,23950344-23950493,
           23950565-23950674,23951401-23951518,23951597-23951827,
           23952345-23952524,23953639-23953908,23954930-23954979,
           23955213-23955288,23955396-23955483,23956010-23956101,
           23956200-23956529,23957484-23957593,23957810-23957907,
           23959538-23959566
          Length = 811

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
 Frame = +1

Query: 394 YIERQWRGCLRGQQRQDQFKSQLEIHSAVGEQQGLL----QDKNTERKQNLALKVRTNRN 561
           YIE Q       +Q+Q Q+  Q   H  +  QQ LL    Q +  +++Q    + + +R+
Sbjct: 77  YIETQQAKAEHQKQQQQQYHHQQHQHQQIQMQQMLLQRAAQQQQQQQQQQQQQQQQLHRD 136

Query: 562 GDHMAYGV-ANFDG 600
           G H+  G+ + F G
Sbjct: 137 GSHLFNGITSGFSG 150


>08_02_1381 -
           26551920-26552053,26552963-26553070,26553154-26553340,
           26554107-26554316
          Length = 212

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 311 GDCFPVEFTLILAENYVKLMYRRDGLAFTLSDNGGVAYGDSKDRTSSR 454
           GD   V F +I A+      Y  DG+   + D  G    DS+D+TS +
Sbjct: 44  GDTVHVSFVVIKADT--PWHYSEDGVDLVVKDPNGAQVRDSRDKTSDK 89


>11_01_0596 +
           4755453-4755490,4755675-4756047,4757739-4758940,
           4759026-4759392
          Length = 659

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 295 SLASRAGRRTPCSSLVVXYQIVYD 224
           SLA+R GR TPC + +  Y+ ++D
Sbjct: 422 SLATRLGRITPCRAQIEWYKALFD 445


>09_06_0055 -
           20550889-20551531,20551612-20551889,20552035-20552203,
           20552397-20552534,20553945-20553997,20554521-20554574,
           20556062-20556295,20556399-20556986,20557065-20557419,
           20557494-20557694,20557925-20557998,20558114-20558254,
           20558611-20558670,20558750-20558806,20559281-20559318,
           20559419-20559578
          Length = 1080

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 592 FDGFRAQWYLVPAELNNEVYSSSLTG-TTAWLXRCRXRWTAXVTAWPGG 735
           F G      L+  +L  ++ +  LT  T+A+  +CR  +   ++AWP G
Sbjct: 637 FVGLTVCIILIFGQLTEKIMTGKLTDFTSAYAYKCRLFFIRILSAWPAG 685


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,574,874
Number of Sequences: 37544
Number of extensions: 390513
Number of successful extensions: 1022
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)