Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0586
         (754 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29759| Best HMM Match : ABC_tran (HMM E-Value=0)                    31   1.3  
SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)                   29   5.4  
SB_22988| Best HMM Match : RVT_1 (HMM E-Value=5.70328e-43)             29   5.4  
SB_7282| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.1  

>SB_29759| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1308

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/72 (25%), Positives = 33/72 (45%)
 Frame = +2

Query: 125 GDLYNDVIIADYDSAVERSKLIYTDNKGELITNVVNNLIRNNKRTAWSTPTSSGCKAPRT 304
           G +Y  +I +   + +       TD +  L+  ++N  IR  K  AW  P+S   K  R 
Sbjct: 209 GIIYKKIIGSRQSAGIRLQGSRITDRRITLVREIING-IRTVKMHAWEKPSSDIVKRTRK 267

Query: 305 SSGDCFPVEFTL 340
           +  + + + FT+
Sbjct: 268 AEVNKYRLMFTI 279


>SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)
          Length = 924

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +1

Query: 373 QARRSRFYIERQWRGCLRGQQRQDQFKSQLEIHSAVGEQQGL--LQDKNTERKQNLA 537
           + RR +   ERQ R      ++Q+Q + QLE+     EQQ    LQ +  E KQ +A
Sbjct: 637 ERRRQQEEAERQRREQEEVFKQQEQQRQQLELQKRQQEQQRQQELQKRQQEEKQRMA 693


>SB_22988| Best HMM Match : RVT_1 (HMM E-Value=5.70328e-43)
          Length = 1029

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -1

Query: 217  DELTLVIGVD*FASFNSRVVISNYDVIVKISARISLKAVPSSAYRD 80
            ++L+L I    F  F+    ISNY + +KI+ +   K  P S +RD
Sbjct: 910  NKLSLNIDKTNFIIFHPPQKISNYTLSIKINGKCIKKEKPLSVFRD 955


>SB_7282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1702

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 715  PKLSIVXDSVKAML*SRLKMKNKLRYLIQRE 623
            P++ ++  S KA    RLK K KLR L+ RE
Sbjct: 1525 PRILVLAQSFKAGSHERLKRKQKLRSLMSRE 1555


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,594,665
Number of Sequences: 59808
Number of extensions: 459194
Number of successful extensions: 1249
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)