Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0585
         (531 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_21437| Best HMM Match : RNA_pol_Rpb6 (HMM E-Value=3)                27   9.5  

>SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +2

Query: 362 GKLALLSVXXXXXXXXXXXXXXECGLXLIAXXVXPRXLRXAGLTVQDVS 508
           G LALLSV              + G  L+A       +R AG+ V+DVS
Sbjct: 33  GSLALLSVSNKKGLVEFAKQLHDLGFRLVASGGTANAIRNAGIPVRDVS 81


>SB_21437| Best HMM Match : RNA_pol_Rpb6 (HMM E-Value=3)
          Length = 112

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +3

Query: 285 YVDDNHYHFTGPFR*SDRLRRTWRQMEN*LFSAFRTKXXYSR*QRVCRNVA 437
           Y +D+++   G    ++RLRR  RQ     FS  R K  Y+R Q     VA
Sbjct: 17  YSEDDNF-IIGSDLEAERLRRDARQFHRSKFSETRRKAHYARLQNASLKVA 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,233,484
Number of Sequences: 59808
Number of extensions: 240988
Number of successful extensions: 422
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)