Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0585
         (531 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025464-2|AAN84804.1|  496|Caenorhabditis elegans Prion-like-(q...    29   2.1  
AF025464-1|AAN84805.1|  529|Caenorhabditis elegans Prion-like-(q...    29   2.1  
L07144-6|AAK21443.1|  834|Caenorhabditis elegans Temporarily ass...    27   8.4  
L07144-5|AAU20841.1|  837|Caenorhabditis elegans Temporarily ass...    27   8.4  

>AF025464-2|AAN84804.1|  496|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
           isoform a protein.
          Length = 496

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 97  FPNQMIEQINIALEQKGSGNFSAWVIEACRRI 2
           FPN  I++      + G+ NF A+V++ C R+
Sbjct: 92  FPNLQIDRAGEGWPRLGAQNFDAFVLDGCSRV 123


>AF025464-1|AAN84805.1|  529|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
           isoform b protein.
          Length = 529

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 97  FPNQMIEQINIALEQKGSGNFSAWVIEACRRI 2
           FPN  I++      + G+ NF A+V++ C R+
Sbjct: 114 FPNLQIDRAGEGWPRLGAQNFDAFVLDGCSRV 145


>L07144-6|AAK21443.1|  834|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 84, isoform a protein.
          Length = 834

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = -1

Query: 426 DRLFANESXPXLS--ETLRRASFPF-DAMFCVTCRITGKDP*SDNDYHLHITTCVEAI 262
           +R+  NES P  S  + L  A+    + + C +C+   KD      YHL   TC++ +
Sbjct: 752 ERVKRNESVPAQSGDQVLEEANRQMKETLTCPSCKTRPKDCIMLKCYHLFCETCIKTM 809


>L07144-5|AAU20841.1|  837|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 84, isoform b protein.
          Length = 837

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = -1

Query: 426 DRLFANESXPXLS--ETLRRASFPF-DAMFCVTCRITGKDP*SDNDYHLHITTCVEAI 262
           +R+  NES P  S  + L  A+    + + C +C+   KD      YHL   TC++ +
Sbjct: 755 ERVKRNESVPAQSGDQVLEEANRQMKETLTCPSCKTRPKDCIMLKCYHLFCETCIKTM 812


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,297,138
Number of Sequences: 27780
Number of extensions: 173341
Number of successful extensions: 270
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)