Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0584
(797 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 75 9e-15
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 36 0.007
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 32 0.083
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.77
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 28 1.3
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 27 2.4
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 27 2.4
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 27 3.1
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 27 3.1
SPAC644.08 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 27 3.1
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa... 26 5.4
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 26 5.4
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 26 5.4
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub... 26 5.4
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 26 5.4
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch... 26 5.4
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 26 7.2
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 26 7.2
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom... 25 9.5
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 25 9.5
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 75.4 bits (177), Expect = 9e-15
Identities = 61/187 (32%), Positives = 87/187 (46%), Gaps = 14/187 (7%)
Frame = +1
Query: 256 KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGT 435
+P + K LVVQ+ V E+ ++CGG YLK+ + +M Y IMFGPD CG
Sbjct: 109 EPINEPEKDLVVQYEVNPEEGLNCGGAYLKLL-AEPTHGEMSNSIDYRIMFGPDKCGV-N 166
Query: 436 KKVHVIFSYKG--KNHLIKKDIRCKDVSTHICTL*L*NL-TTPMKSSLTMR-KLNLAT*R 603
+VH IF +K +K + + S + + NL T +K T ++N R
Sbjct: 167 DRVHFIFKHKNPLTGEYSEKHLDSRPAS--LLKPGITNLYTLIVKPDQTFEVRINGDVVR 224
Query: 604 QTGTSFR------LRKSRTLKPRNQKTG--MTSPLFPDPEDKKPEXWDK--PEXHPDPDA 753
Q G+ F L P + K + P PDP KP+ WD+ P PDPDA
Sbjct: 225 Q-GSLFYDFIPPVLPPVEIYDPEDIKPADWVDEPEIPDPNAVKPDDWDEDAPRMIPDPDA 283
Query: 754 TKPKTWM 774
KP+ W+
Sbjct: 284 VKPEDWL 290
Score = 64.9 bits (151), Expect = 1e-11
Identities = 33/62 (53%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Frame = +3
Query: 516 THLYTLIVKPDNTYEVLIDNEKVESGDLEADW--DFLPPKKIKDPEAKKPEDWDDKPTIS 689
T+LYTLIVKPD T+EV I+ + V G L D+ LPP +I DPE KP DW D+P I
Sbjct: 201 TNLYTLIVKPDQTFEVRINGDVVRQGSLFYDFIPPVLPPVEIYDPEDIKPADWVDEPEIP 260
Query: 690 RP 695
P
Sbjct: 261 DP 262
Score = 39.9 bits (89), Expect = 4e-04
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = +1
Query: 682 LFPDPEDKKPEXW--DKPEXHPDPDATKPKTW 771
+ PDP+ KPE W D+P PDP+A KP+ W
Sbjct: 277 MIPDPDAVKPEDWLEDEPLYIPDPEAQKPEDW 308
Score = 37.5 bits (83), Expect = 0.002
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +3
Query: 606 DWDFLPPKKIKDPEAKKPEDW-DDKPT-ISRPRRQE 707
DWD P+ I DP+A KPEDW +D+P I P Q+
Sbjct: 269 DWDEDAPRMIPDPDAVKPEDWLEDEPLYIPDPEAQK 304
Score = 36.7 bits (81), Expect = 0.004
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = +3
Query: 606 DWDFLPPKKIKDPEAKKPEDWDDK 677
DW P I DPEA+KPEDWDD+
Sbjct: 288 DWLEDEPLYIPDPEAQKPEDWDDE 311
Score = 29.5 bits (63), Expect = 0.58
Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Frame = +1
Query: 679 PLF-PDPEDKKPEXWDKPE 732
PL+ PDPE +KPE WD E
Sbjct: 294 PLYIPDPEAQKPEDWDDEE 312
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 35.9 bits (79), Expect = 0.007
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = -3
Query: 234 NLASSEVFKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHE-SSGNFSSKNTSQFIE 58
N SSE F S+S SL P VN + S + ++ L S + S+ NF+S ++S +
Sbjct: 475 NYTSSEAF---STSSSLVVIPPVNSSLVTSSTSFTKFSSLSSSQLSTENFTSASSSLSLT 531
Query: 57 DNASKLTTTSTT 22
+ S L+T STT
Sbjct: 532 NAKSSLSTPSTT 543
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 32.3 bits (70), Expect = 0.083
Identities = 21/64 (32%), Positives = 29/64 (45%)
Frame = +1
Query: 280 PLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFS 459
P+V+ F VK + CG Y+ + + K++ E P I FG CG I S
Sbjct: 103 PIVLSFQVKPTKPWTCGHAYVSLVH-QSNPKNVSKEPPSVIRFGVKKCGMFDYISLSIIS 161
Query: 460 YKGK 471
Y GK
Sbjct: 162 YDGK 165
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 29.1 bits (62), Expect = 0.77
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 585 ESGDLEADWDFLPPKKIKDPEAKKPEDWDDKP 680
E L+ LP + K P AKKPED++ P
Sbjct: 157 EKNTLDLKHCLLPSPEYKAPPAKKPEDYEASP 188
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -3
Query: 165 NLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTT 34
N N F + + S +SGNFS T Q DN S +T
Sbjct: 575 NSNSQRPFSTVPSESNVFSRNASGNFSMSQTHQPTTDNTSSFST 618
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 27.5 bits (58), Expect = 2.4
Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 1/136 (0%)
Frame = -3
Query: 456 EDYVYLLGSRTTNVRAEHNLIWSLSVHVLL-LQFAVKDLEVSASTVNVLFMFDSELDYQG 280
ED V G + + HNL+ S+ L ++D V T N+ +++LD+
Sbjct: 154 EDEVINEGLESEIDGSSHNLLDSILQKCLASTSVLMQDALVYIGTANMSTRLEAKLDFMS 213
Query: 279 FTLITERFDLRERA*NLASSEVFKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHES 100
F+ + R N + + +P+S S + + P + S S + ++
Sbjct: 214 FSSVKSNSTSRLLNINGITVSMVRPISKSNAGSSSPPRSEESFVSMDSSSSIVEGFENDL 273
Query: 99 SGNFSSKNTSQFIEDN 52
S + + N S I N
Sbjct: 274 SPSQVTLNESSIISSN 289
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = -3
Query: 255 DLRERA*NLASSEV----FKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESS 97
DLR RA L+ E+ + LS+ LK +++ FP SFP +Y + ++SS
Sbjct: 122 DLRMRAIFLSIDEISMICIRILSAEERLKTGRSIDSGFPFSFPVHLIYDMCILNDSS 178
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/45 (24%), Positives = 19/45 (42%)
Frame = +3
Query: 546 DNTYEVLIDNEKVESGDLEADWDFLPPKKIKDPEAKKPEDWDDKP 680
D E+ ++N ++ + WD PP + K+ WD P
Sbjct: 198 DKKRELELNNTEISQKPKRSRWDQAPPSVTQVSTTKRRSRWDKAP 242
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 27.1 bits (57), Expect = 3.1
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Frame = +3
Query: 495 PLQRCVYTHLYTLIVKPDNTYEVLIDNEKVESGDL-EADWDFLPPKKIKDP----EAKKP 659
P ++ + L T I + ++ + + + K+E+ +L E D F+ ++ + P E+ +
Sbjct: 150 PTKKKSFKSLDTSIFQAEDQFRHPVSS-KLENSELSEVDKPFIASRRSRKPVSYAESDED 208
Query: 660 EDWDDKPT 683
ED+DD PT
Sbjct: 209 EDFDDAPT 216
>SPAC644.08 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +1
Query: 550 TPMKSSLTMRKLNLAT*RQTGTSFRLRKSRTLKPRNQKTGMTSPLFPD 693
TP ++ + +RKL+ ++ SF++ + R K + +TS LFPD
Sbjct: 51 TPEEALINLRKLHAEGSKER--SFKMVQGRIWKKGYESNELTSHLFPD 96
>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 738
Score = 26.2 bits (55), Expect = 5.4
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -3
Query: 330 STVNVLFMFDSELDYQGFTLITERFDLRERA*NLASS-EVFKPLSSSGSLKN 178
+T+ V+ + D QG ++ FD+R R NL SS +K + LKN
Sbjct: 266 NTITVIEKLQGDCDRQGSIIVNTMFDVR-RIDNLVSSIASYKYILLHAKLKN 316
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 234 NLASSEVFKPLSSSGSLKNFPAVNLNFPNSFP 139
N +E F+P + SL N P +N ++ ++ P
Sbjct: 685 NSTPNEAFQPFDQTSSLYNVPGLNKSYVSNQP 716
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +2
Query: 86 EKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDA 229
+ F +D + +W EH K ++ + + FS+ DD+ + SE +
Sbjct: 49 QAFQEDEGDEDWEEEEHKPKAKRRYNTRSNESFSE-GDDEPFEVSESS 95
>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 214
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 610 GTSFRLRKSRTLKPRNQKTGMTSPLFPDPEDKKPEXWDKPEXHPDPDATKPK 765
G + K T++P + T P P PE+K+ + +PE P +A +P+
Sbjct: 84 GADEKEEKKETIQPPEEVK--TEP--PQPEEKEGKEAKEPEEPPKEEAEEPQ 131
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 597 LEADWDFLPPKKIKDPEAKKPEDWDD 674
++ D F+PP +I PE K +WD+
Sbjct: 94 VDEDPAFIPPARILFPEEKLSMEWDN 119
>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -1
Query: 305 LTVNWTTKGLPSLLNGLTYGREHRTSHLQR 216
L +NW + SL N T REHR L R
Sbjct: 89 LNINWGNDDVHSLTNLETIAREHRYQVLTR 118
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 83 EEKFPDDSWESNWVYS 130
EEKFPD +W +W S
Sbjct: 251 EEKFPDIAWRVSWSLS 266
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 606 DWDFLPPKKIKDPEAKKPEDW 668
DWD +P ++ K EA KP DW
Sbjct: 209 DWDDVPWRE-KPLEAMKPRDW 228
>SPCPJ732.01 |vps5||retromer complex subunit
Vps5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 676 SPLFPDPEDKKPEXWDKPEXHPDPDATKPKT 768
SPL P D++P E P+ A+ PKT
Sbjct: 21 SPLNPPKTDQEPSAEGVEEESPNVQASPPKT 51
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -1
Query: 128 CTPNCFPTNHQETSPQRIHHNLSKIMPAS*Q 36
C P FP N+QE H+ I AS Q
Sbjct: 791 CKPESFPANYQEVLDYYTHNGFRVIACASKQ 821
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,457,205
Number of Sequences: 5004
Number of extensions: 76424
Number of successful extensions: 272
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -