Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0584
(797 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.) 117 1e-26
SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0) 73 4e-13
SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.066
SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13) 34 0.12
SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8) 34 0.15
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75) 32 0.47
SB_50693| Best HMM Match : C2 (HMM E-Value=0) 29 3.3
SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5) 29 3.3
SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_10791| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_27442| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8
SB_28048| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8
>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1137
Score = 117 bits (281), Expect = 1e-26
Identities = 51/60 (85%), Positives = 53/60 (88%)
Frame = +3
Query: 516 THLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKDPEAKKPEDWDDKPTISRP 695
THLYTLIV+PDNTYEV IDNEKVESG+LE DWDFLPPK IKDPEAKKPEDWDDK I P
Sbjct: 852 THLYTLIVRPDNTYEVKIDNEKVESGELEKDWDFLPPKTIKDPEAKKPEDWDDKKMIDDP 911
Score = 80.6 bits (190), Expect = 1e-15
Identities = 36/60 (60%), Positives = 42/60 (70%)
Frame = +2
Query: 74 VFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYALSRK 253
V F EKF D SWE WV S G + GKFK TAGKF+ D E DKG++TSEDA+FY +S K
Sbjct: 756 VHFLEKFEDKSWEDRWVSSTSKGAQQGKFKWTAGKFYGDAEADKGIQTSEDAKFYGISAK 815
Score = 60.1 bits (139), Expect = 2e-09
Identities = 24/30 (80%), Positives = 28/30 (93%)
Frame = +1
Query: 256 KPFSNEGKPLVVQFTVKHEQDIDCGGGYLK 345
KPF+NEGK LV+QF+VKHEQ+IDCGGGY K
Sbjct: 818 KPFTNEGKTLVIQFSVKHEQNIDCGGGYAK 847
Score = 55.6 bits (128), Expect = 4e-08
Identities = 22/34 (64%), Positives = 25/34 (73%)
Frame = +1
Query: 682 LFPDPEDKKPEXWDKPEXHPDPDATKPKTWMIEI 783
+ DPEDKKPE WDKP+ PDPDA KP+ W EI
Sbjct: 907 MIDDPEDKKPEDWDKPQNIPDPDAKKPEDWDDEI 940
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = +3
Query: 606 DWDFLPPKKIKDPEAKKPEDWDDK 677
DWD P+ I DP+AKKPEDWDD+
Sbjct: 918 DWD--KPQNIPDPDAKKPEDWDDE 939
Score = 37.5 bits (83), Expect = 0.012
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 691 DPEDKKPEXWDKPEXHPDPDATKPKTW 771
DPE KKPE WD + DP+ KP+ W
Sbjct: 893 DPEAKKPEDWDDKKMIDDPEDKKPEDW 919
>SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)
Length = 1086
Score = 72.5 bits (170), Expect = 4e-13
Identities = 32/62 (51%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
Frame = +3
Query: 516 THLYTLIVKPDNTYEVLIDNEKVESGDLEADW--DFLPPKKIKDPEAKKPEDWDDKPTIS 689
THL+TL+V+PDNT+EV ID E V G L D PP +I+DP+ K+PEDWD++ I
Sbjct: 91 THLFTLVVRPDNTFEVFIDQESVNKGSLLEDMTPPVNPPAEIEDPDDKRPEDWDEREKIP 150
Query: 690 RP 695
P
Sbjct: 151 DP 152
Score = 66.1 bits (154), Expect = 3e-11
Identities = 50/147 (34%), Positives = 67/147 (45%), Gaps = 8/147 (5%)
Frame = +1
Query: 355 CKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKG-KNHLIKKDIRCKDVSTHICTL 531
C L Q+ +TPY IMFGPD CG +K+H IF +K KN I++ K +
Sbjct: 28 CHLFQESFGDKTPYTIMFGPDKCGED-RKLHFIFRHKNPKNGTIEEKHAKKPTGNY---- 82
Query: 532 *L*NLTTPMKSSLTMRKLNLAT*--RQTGTSFRLRKSRTLKPRNQKTGMTSPLFP----- 690
S +K +L T R T ++ + MT P+ P
Sbjct: 83 ---------NSVFDGKKTHLFTLVVRPDNTFEVFIDQESVNKGSLLEDMTPPVNPPAEIE 133
Query: 691 DPEDKKPEXWDKPEXHPDPDATKPKTW 771
DP+DK+PE WD+ E PDPDA KP W
Sbjct: 134 DPDDKRPEDWDEREKIPDPDAEKPDDW 160
Score = 39.1 bits (87), Expect = 0.004
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +1
Query: 688 PDPEDKKPEXW--DKPEXHPDPDATKPKTW 771
PD KKPE W D+PE PDP+ KP+ W
Sbjct: 169 PDTNAKKPEGWLDDEPEYVPDPNGIKPEDW 198
Score = 38.7 bits (86), Expect = 0.005
Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +3
Query: 570 DNEKVESGDLEA--DWDFLPPKKIKDPEAKKPEDW-DDKP 680
+ EK+ D E DWD P KI D AKKPE W DD+P
Sbjct: 145 EREKIPDPDAEKPDDWDEDAPVKIPDTNAKKPEGWLDDEP 184
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 624 PKKIKDPEAKKPEDWDDK 677
P+ + DP KPEDWDD+
Sbjct: 184 PEYVPDPNGIKPEDWDDE 201
>SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 35.1 bits (77), Expect = 0.066
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1
Query: 332 PPQSMSCSCLTVNWTTKGLPSLLNG 258
P + SC CL V W T GLP L++G
Sbjct: 429 PSEQNSCQCLFVGWQTVGLPQLIHG 453
>SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)
Length = 562
Score = 34.3 bits (75), Expect = 0.12
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +1
Query: 559 KSSLTMRKLNLAT*RQTGTSFRLRKSRTLKPRNQ--KTGMTSPLFPDPEDKKPEXWDKPE 732
K S T+RKL +A ++ G S R R+ R+ K Q K + P PE+ K + KPE
Sbjct: 464 KKSRTLRKLTVA--KEKGASERRRRGRSPKSDEQKKKDEDSKPEEAKPEEPKEDEKSKPE 521
Query: 733 XHPDPDATKPK 765
+ KP+
Sbjct: 522 ETKAEEEAKPE 532
>SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)
Length = 360
Score = 33.9 bits (74), Expect = 0.15
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +1
Query: 541 NLTTPMKSSL-TMRKLNLAT*RQTGTSFRLRKSRTLKPRNQKTGMTSPLFPDPEDKKPEX 717
+L T +K+SL T RK +L T +T T L S LK R + + TSP K +
Sbjct: 249 SLKTSLKTSLETSRKTSLKTGPKTSTKTSLETS--LKTRLKTSLKTSPKTSPEISPKDKL 306
Query: 718 WDKPEXHPD 744
DKPE P+
Sbjct: 307 EDKPEDRPE 315
>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
Length = 568
Score = 32.3 bits (70), Expect = 0.47
Identities = 19/46 (41%), Positives = 21/46 (45%)
Frame = +1
Query: 631 KSRTLKPRNQKTGMTSPLFPDPEDKKPEXWDKPEXHPDPDATKPKT 768
K RT KPR K T P P KP KP+ P TKP+T
Sbjct: 115 KPRTTKPRTTKPHTTKPCTTKPHTTKPPT-TKPQT-TKPHTTKPRT 158
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/52 (38%), Positives = 21/52 (40%)
Frame = +1
Query: 613 TSFRLRKSRTLKPRNQKTGMTSPLFPDPEDKKPEXWDKPEXHPDPDATKPKT 768
T R K+ T KP N K T P P KP KP P TKP T
Sbjct: 14 TKPRTTKTHTTKPHNIKLYTTKPRTTKPHTTKPHT-TKPHT-IKPHTTKPHT 63
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/52 (38%), Positives = 21/52 (40%)
Frame = +1
Query: 613 TSFRLRKSRTLKPRNQKTGMTSPLFPDPEDKKPEXWDKPEXHPDPDATKPKT 768
T R K RT KP K T P P KP+ KP P TKP T
Sbjct: 114 TKPRTTKPRTTKPHTTKPCTTKPHTTKPPTTKPQT-TKPHT-TKPRTTKPPT 163
>SB_50693| Best HMM Match : C2 (HMM E-Value=0)
Length = 1049
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 588 SGDLEADWDFLPPKKIKDPEAKKPEDWDDKPTISRPRRQ 704
S +AD+ +LP + P+ +K W K ++P+RQ
Sbjct: 964 SDQTDADFSYLPVQDSPSPKPRKESRWKMKNLKAKPKRQ 1002
>SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5)
Length = 435
Score = 29.5 bits (63), Expect = 3.3
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +1
Query: 562 SSLTMRKLNLAT*RQTGTSFRLRKS-RTLKPRNQKTGMTSPLFPDPEDK-KPEXWDKPE 732
S T N T R+T TS + S +T RN KT + P+DK KP+ DKP+
Sbjct: 79 SHKTKTSRNTKTSRKTKTSSNTKTSLKTKTSRNTKTSRNTKT--KPQDKNKPQDQDKPQ 135
>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1646
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 649 PRNQKTGMTSPLFPDPEDKKPEXWDKPE 732
P+++ T PL PDPE E W P+
Sbjct: 1108 PQSRLTQWKQPLLPDPETSHGETWGMPK 1135
>SB_10791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 510
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 570 DNEKVESGDLEADWDFLPPKKIKDPEAKKPE 662
D++ + GD E + FLPP + E+K PE
Sbjct: 106 DSDNGDKGDSEDEESFLPPSIFDESESKGPE 136
>SB_27442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +3
Query: 576 EKVESGDLEADWD-FLPPKKIKDPEAKKPEDW 668
EKV +G++ ++D LPP++ K PE+ PE +
Sbjct: 48 EKVWTGEVWREFDPLLPPRRQKGPESLDPETY 79
>SB_28048| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -2
Query: 136 VLTVHPIAFPRIIRKLLLKEYI 71
+LT H + P++IRK+ LK+Y+
Sbjct: 73 LLTAHLVVAPKLIRKMPLKDYV 94
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,128,743
Number of Sequences: 59808
Number of extensions: 608814
Number of successful extensions: 1731
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1712
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -