Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0584
         (797 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin pr...   165   3e-41
AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin ...   165   3e-41
Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical pr...    71   1e-12
AF026205-6|AAM69068.1|  908|Caenorhabditis elegans Hypothetical ...    29   3.9  
AF026205-5|AAB71258.1|  880|Caenorhabditis elegans Hypothetical ...    29   3.9  
AF026205-4|AAD47129.1|  885|Caenorhabditis elegans Hypothetical ...    29   3.9  
AF026205-3|AAB71257.1|  930|Caenorhabditis elegans Hypothetical ...    29   3.9  
AL132877-17|CAB60849.2|  269|Caenorhabditis elegans Hypothetical...    28   6.7  
AF000195-3|AAC24268.1|  689|Caenorhabditis elegans Hmg protein 3...    28   8.9  

>X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin
           protein.
          Length = 395

 Score =  165 bits (401), Expect = 3e-41
 Identities = 82/173 (47%), Positives = 104/173 (60%), Gaps = 1/173 (0%)
 Frame = +1

Query: 256 KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGT 435
           K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV     +  D HGETPY +MFGPDICGP T
Sbjct: 78  KDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPDICGP-T 136

Query: 436 KKVHVIFSYKGKNHLIKKDIRCK-DVSTHICTL*L*NLTTPMKSSLTMRKLNLAT*RQTG 612
           ++VHVI +YKG+N LIKK+I CK D  TH+ TL L N     +  +        +  +  
Sbjct: 137 RRVHVILNYKGENKLIKKEITCKSDELTHLYTLIL-NSDNTYEVKIDGESAQTGSLEEDW 195

Query: 613 TSFRLRKSRTLKPRNQKTGMTSPLFPDPEDKKPEXWDKPEXHPDPDATKPKTW 771
                +K +    +  +         D ED KPE W+KPE  PDPDA KP+ W
Sbjct: 196 DLLPAKKIKDPDAKKPEDWDEREYIDDAEDAKPEDWEKPEHIPDPDAKKPEDW 248



 Score = 74.5 bits (175), Expect = 8e-14
 Identities = 31/67 (46%), Positives = 49/67 (73%)
 Frame = +2

Query: 62  INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYA 241
           ++ +V+F+E+F D SWE  WV S+H   +FG FKL+AGKFF     D+G++TS+DA+FY+
Sbjct: 13  VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYS 71

Query: 242 LSRKSNR 262
            + K ++
Sbjct: 72  RAAKFDK 78



 Score = 38.7 bits (86), Expect = 0.005
 Identities = 15/24 (62%), Positives = 19/24 (79%)
 Frame = +3

Query: 606 DWDFLPPKKIKDPEAKKPEDWDDK 677
           DW+   P+ I DP+AKKPEDWDD+
Sbjct: 230 DWE--KPEHIPDPDAKKPEDWDDE 251


>AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin
           protein 1 protein.
          Length = 395

 Score =  165 bits (401), Expect = 3e-41
 Identities = 82/173 (47%), Positives = 104/173 (60%), Gaps = 1/173 (0%)
 Frame = +1

Query: 256 KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGT 435
           K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV     +  D HGETPY +MFGPDICGP T
Sbjct: 78  KDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPDICGP-T 136

Query: 436 KKVHVIFSYKGKNHLIKKDIRCK-DVSTHICTL*L*NLTTPMKSSLTMRKLNLAT*RQTG 612
           ++VHVI +YKG+N LIKK+I CK D  TH+ TL L N     +  +        +  +  
Sbjct: 137 RRVHVILNYKGENKLIKKEITCKSDELTHLYTLIL-NSDNTYEVKIDGESAQTGSLEEDW 195

Query: 613 TSFRLRKSRTLKPRNQKTGMTSPLFPDPEDKKPEXWDKPEXHPDPDATKPKTW 771
                +K +    +  +         D ED KPE W+KPE  PDPDA KP+ W
Sbjct: 196 DLLPAKKIKDPDAKKPEDWDEREYIDDAEDAKPEDWEKPEHIPDPDAKKPEDW 248



 Score = 74.5 bits (175), Expect = 8e-14
 Identities = 31/67 (46%), Positives = 49/67 (73%)
 Frame = +2

Query: 62  INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYA 241
           ++ +V+F+E+F D SWE  WV S+H   +FG FKL+AGKFF     D+G++TS+DA+FY+
Sbjct: 13  VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYS 71

Query: 242 LSRKSNR 262
            + K ++
Sbjct: 72  RAAKFDK 78



 Score = 38.7 bits (86), Expect = 0.005
 Identities = 15/24 (62%), Positives = 19/24 (79%)
 Frame = +3

Query: 606 DWDFLPPKKIKDPEAKKPEDWDDK 677
           DW+   P+ I DP+AKKPEDWDD+
Sbjct: 230 DWE--KPEHIPDPDAKKPEDWDDE 251


>Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical
           protein ZK632.6 protein.
          Length = 619

 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 53/178 (29%), Positives = 76/178 (42%), Gaps = 7/178 (3%)
 Frame = +1

Query: 259 PFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFD--CKLEQKDMHGETPYEIMFGPDICGPG 432
           PF+ +    VVQ+ +K E+  +CGGGYLK+     + +  +   +T Y IMFGPD CG  
Sbjct: 130 PFAFDANTFVVQYDIKFEEGQECGGGYLKLLSEGAEKDLANFQDKTAYTIMFGPDKCG-A 188

Query: 433 TKKVHVIFSYKGKNHLIKKDIRCKDVSTHICTL*L*NLTTPMKSSLTMRKLNLAT*RQTG 612
           T KVH+IF YK   +    +      +T         + +            L   + TG
Sbjct: 189 TGKVHLIFRYKNPINGTISEYHANQPTT---------IGSTYWDDHNTHLFTLVV-KPTG 238

Query: 613 TSFRLRKSRTLKPRNQKTGMTSPLFP-----DPEDKKPEXWDKPEXHPDPDATKPKTW 771
                   ++L   N  + +T  L P     D  D KP  WD+ E   D  A KP  W
Sbjct: 239 EYSVSVDGKSLYYGNMMSDVTPALTPPKQIFDETDLKPVDWDERENIEDESAVKPDDW 296



 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
 Frame = +3

Query: 516 THLYTLIVKPDNTYEVLIDNEKVESGDLEADWD--FLPPKKIKDPEAKKPEDWDDKPTI 686
           THL+TL+VKP   Y V +D + +  G++ +D      PPK+I D    KP DWD++  I
Sbjct: 227 THLFTLVVKPTGEYSVSVDGKSLYYGNMMSDVTPALTPPKQIFDETDLKPVDWDERENI 285



 Score = 38.3 bits (85), Expect = 0.006
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = +3

Query: 537 VKPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKDPEAKKPEDWDD 674
           VKPD+  E    +   E+     DW+    + I DPEAKKP+DWD+
Sbjct: 291 VKPDDWDENEPQSVVDEAATKPYDWNEEENELIADPEAKKPQDWDE 336



 Score = 31.1 bits (67), Expect = 0.96
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 570 DNEKVESGDLEADWDFLPPKKIKDPEAKKPEDWDDK 677
           +N + ES     DWD   P+ + D  A KP DW+++
Sbjct: 283 ENIEDESAVKPDDWDENEPQSVVDEAATKPYDWNEE 318


>AF026205-6|AAM69068.1|  908|Caenorhabditis elegans Hypothetical
           protein T23E7.2e protein.
          Length = 908

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 628 RKSRTLK-PRNQKTGMTSPLFPDPEDKKPEXWDKPEXHPDPDA 753
           R  RT K PR  KT       P+P  ++PE   +PE  P+P A
Sbjct: 476 RTPRTPKTPRTPKTPAVVEPEPEPVAEEPEPVAEPEPEPEPVA 518


>AF026205-5|AAB71258.1|  880|Caenorhabditis elegans Hypothetical
           protein T23E7.2b protein.
          Length = 880

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 628 RKSRTLK-PRNQKTGMTSPLFPDPEDKKPEXWDKPEXHPDPDA 753
           R  RT K PR  KT       P+P  ++PE   +PE  P+P A
Sbjct: 426 RTPRTPKTPRTPKTPAVVEPEPEPVAEEPEPVAEPEPEPEPVA 468


>AF026205-4|AAD47129.1|  885|Caenorhabditis elegans Hypothetical
           protein T23E7.2c protein.
          Length = 885

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 628 RKSRTLK-PRNQKTGMTSPLFPDPEDKKPEXWDKPEXHPDPDA 753
           R  RT K PR  KT       P+P  ++PE   +PE  P+P A
Sbjct: 476 RTPRTPKTPRTPKTPAVVEPEPEPVAEEPEPVAEPEPEPEPVA 518


>AF026205-3|AAB71257.1|  930|Caenorhabditis elegans Hypothetical
           protein T23E7.2a protein.
          Length = 930

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 628 RKSRTLK-PRNQKTGMTSPLFPDPEDKKPEXWDKPEXHPDPDA 753
           R  RT K PR  KT       P+P  ++PE   +PE  P+P A
Sbjct: 476 RTPRTPKTPRTPKTPAVVEPEPEPVAEEPEPVAEPEPEPEPVA 518


>AL132877-17|CAB60849.2|  269|Caenorhabditis elegans Hypothetical
           protein Y105E8B.7 protein.
          Length = 269

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 513 YTHLYTLIVKPDN-TYEVLIDNEKVESGDLEADWDFLPP 626
           +TH +TL VKP N  Y+   DN+ ++    E    F  P
Sbjct: 23  HTHKWTLFVKPGNRDYDEFPDNKLIQKVKFEIHESFAQP 61


>AF000195-3|AAC24268.1|  689|Caenorhabditis elegans Hmg protein 3
           protein.
          Length = 689

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +3

Query: 540 KPDNTYEVLIDNEKVESGDLEADWDFLPPKKIKDPEAKKPEDWDDKP 680
           +PD+ Y+   + +   +G+ + D + + PKK +  E K   +  +KP
Sbjct: 497 EPDDEYDSGSEKDASGTGESDPDEENIEPKKKESKEKKNKREKKEKP 543


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,318,425
Number of Sequences: 27780
Number of extensions: 445815
Number of successful extensions: 1549
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1526
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)