Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0583
(858 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz... 46 7e-06
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch... 43 6e-05
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 29 1.1
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ... 28 2.0
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po... 27 3.4
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica... 27 4.5
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 26 7.9
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 26 7.9
>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 46.0 bits (104), Expect = 7e-06
Identities = 21/48 (43%), Positives = 31/48 (64%)
Frame = +3
Query: 108 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGL 251
++ VIV+GTG+ E +++ S GK VLH+D +D+YG AS N L
Sbjct: 4 EYDVIVLGTGLTECVLSGLLSVDGKKVLHIDRNDYYGADSASLNLTQL 51
Score = 28.7 bits (61), Expect = 1.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 431 IDTTPKLLFSRGPLVELLISSNIARYL 511
+D PK L + G L +LI +++ RY+
Sbjct: 73 VDLVPKFLMANGDLTNILIYTDVTRYI 99
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/63 (22%), Positives = 30/63 (47%)
Frame = +1
Query: 511 EFRCVTRVLTWLNDQLMPVPCSRADVFATEAVGIVEKRMLMKXLTSIVGYSEEEMNNEFK 690
EF+ + + + ++ VP + + + + + EKR K L + Y E++ + +K
Sbjct: 100 EFKQIAGSYVYRDGRIAKVPGNEMEALKSPLMSLFEKRRAKKFLEWVNNYREDDPST-YK 158
Query: 691 DWN 699
D N
Sbjct: 159 DIN 161
>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 42.7 bits (96), Expect = 6e-05
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +3
Query: 96 DFPTDFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQ 254
D P + VI+VGT + SI++AA S + VLH+D + YG + S L+
Sbjct: 2 DDPNSYDVIIVGTNLRNSILSAALSWANQRVLHIDENSFYGEIDGSLTLRDLE 54
Score = 42.7 bits (96), Expect = 6e-05
Identities = 19/59 (32%), Positives = 37/59 (62%)
Frame = +1
Query: 529 RVLTWLNDQLMPVPCSRADVFATEAVGIVEKRMLMKXLTSIVGYSEEEMNNEFKDWNNK 705
R+LT N++ + VP SRAD+F + + + KR++M+ + + ++E+ N K+W +K
Sbjct: 135 RLLT-SNEEWIKVPESRADIFNNKNLSLASKRIVMRFMKFVSNIADEQNQNLVKEWESK 192
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 28.7 bits (61), Expect = 1.1
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Frame = +2
Query: 278 DPDRQKQVYNLSEKWFIEKESAQGE--TTDENKGEPRKVWSQADFAAEYXKFNIDTTPKL 451
DP Q +V K + K S T ++ GEP+ A+ Y F + PKL
Sbjct: 302 DPAHQDEVEVFGRKIIVPKASGNVAWFTFEQLCGEPKSAADYLSLASRYHVFIVSDIPKL 361
Query: 452 LFSRGPLVELLISSNIARY 508
L+ I+ A Y
Sbjct: 362 SIESKDLIHRFITFIDALY 380
>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -2
Query: 449 ALELYRC*ISXTPLQNRLGSILFLVHLCFHQLFRLVQ 339
AL +C + PL ++GS FL+ L FH LF +Q
Sbjct: 34 ALFACQCLVLIRPLARKIGSFPFLI-LTFHTLFYPIQ 69
>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 549
Score = 27.1 bits (57), Expect = 3.4
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Frame = +2
Query: 251 TEFIKEVNSDPDRQ-KQVYNLSEKWFIEKE-SAQGETTDENKGEPRKVWSQADFAAEY 418
T E++S+ D Q + Y WF + A D+ GE WS D Y
Sbjct: 231 TSMFMELDSNSDPQFRPKYQAKSSWFAPDDPEASWGNLDDGWGETNGSWSSTDDTKHY 288
>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
modification enzyme|Schizosaccharomyces pombe|chr
2|||Manual
Length = 666
Score = 26.6 bits (56), Expect = 4.5
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 117 VIVVGTGMVESIVAAACSRIG-KNVLHMDSSDHYGGLWASYNFEGL 251
V+V+G G AAA SR+G K L S D+ G + + F G+
Sbjct: 19 VVVIGGGHAGVEAAAAASRLGAKTTLLTKSFDNIGQMSCNPAFGGI 64
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -2
Query: 212 MITRVHVEDILAYPTASSSHYGLDHARSHHDDL 114
+I ++V I+ PTA++ YGLD + H ++
Sbjct: 161 LIAGLNVLRIINEPTAAAIAYGLDRSNQHETNV 193
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 7.9
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +3
Query: 339 LHKAKQLMKTKVNQEKYGAKPILQRSXGNLTSIQLQSCCSLAG-PLSSF*SLRTSRA 506
+ + +L Q+K +P+L R+ G T +LQS AG P S SRA
Sbjct: 490 IREKNKLTMLAARQKKIKNRPVLPRTAGIRTLDELQSSLQSAGLPSDSIEERARSRA 546
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,223,596
Number of Sequences: 5004
Number of extensions: 65529
Number of successful extensions: 212
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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