Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0583
(858 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1165 - 9267891-9268145,9268395-9268510,9268991-9269127,926... 58 1e-08
03_02_0544 - 9362615-9362674,9362783-9362857,9362934-9363144,936... 46 3e-05
05_04_0333 + 20333243-20333329,20335048-20335110,20335276-203353... 46 5e-05
05_03_0407 + 13582595-13582681,13583067-13583129,13583289-135833... 46 5e-05
07_01_1091 - 10015180-10015236,10015705-10015779,10015874-100161... 42 5e-04
12_01_0833 - 7730761-7731030,7731171-7731425,7731565-7731736,773... 29 4.7
09_04_0425 - 17448906-17449195,17449489-17449600 29 6.3
01_03_0233 + 14042548-14044950 29 6.3
10_08_0894 - 21365629-21365766,21365849-21365950,21366042-213662... 28 8.3
01_03_0044 - 11927272-11928516 28 8.3
>01_01_1165 -
9267891-9268145,9268395-9268510,9268991-9269127,
9269645-9269808,9269892-9269972,9270783-9270962,
9271489-9271929,9273234-9273344,9274355-9274463,
9274618-9274643,9274823-9274903,9275013-9275211,
9275374-9275449,9275553-9275769,9276117-9276155,
9276684-9276783,9276962-9277084,9277171-9277895
Length = 1059
Score = 57.6 bits (133), Expect = 1e-08
Identities = 25/52 (48%), Positives = 35/52 (67%)
Frame = +3
Query: 102 PTDFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGLQS 257
PT F V++ GTG+ ES++AAAC+ GK VLH+D + YG L++S L S
Sbjct: 21 PTSFDVVLCGTGLPESVLAAACAAAGKTVLHVDPNPFYGSLFSSLPLPSLPS 72
>03_02_0544 -
9362615-9362674,9362783-9362857,9362934-9363144,
9363279-9363403,9363492-9363593,9363676-9363738,
9363817-9363897,9364248-9364359,9364454-9364626,
9364722-9364829,9364909-9364992,9365131-9365193,
9365652-9365738
Length = 447
Score = 46.4 bits (105), Expect = 3e-05
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +3
Query: 108 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGL 251
++ VIV+GTG+ E I++ S G VLHMD +D+YGG S N L
Sbjct: 4 EYDVIVLGTGLKECIISGLLSVDGLKVLHMDRNDYYGGESTSLNLTKL 51
Score = 33.9 bits (74), Expect = 0.17
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Frame = +2
Query: 347 GETTDENKGEPRKVWSQADFAAEYX----KFNIDTTPKLLFSRGPLVELLISSNIARYL 511
GE+T N + K + + A E+ ++N+D PK + + G LV +LI +++ +YL
Sbjct: 41 GESTSLNLTKLWKRFKGNETAPEHLGVSKEYNVDMVPKFMMANGALVRVLIHTSVTKYL 99
>05_04_0333 +
20333243-20333329,20335048-20335110,20335276-20335359,
20335720-20335827,20335969-20336141,20337135-20337246,
20337468-20337548,20337635-20337697,20337779-20337880,
20338070-20338194,20338317-20338527,20338625-20338699,
20338990-20339043
Length = 445
Score = 45.6 bits (103), Expect = 5e-05
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +3
Query: 108 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGL 251
++ VIV+GTG+ E I++ S G VLHMD +D+YGG S N L
Sbjct: 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGDSTSLNLNQL 51
Score = 31.9 bits (69), Expect = 0.67
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 425 FNIDTTPKLLFSRGPLVELLISSNIARYL 511
+N+D PK + + G LV LI +++ +YL
Sbjct: 71 YNVDMVPKFMMANGTLVRTLIHTDVTKYL 99
>05_03_0407 +
13582595-13582681,13583067-13583129,13583289-13583372,
13583757-13583864,13584018-13584190,13585190-13585301,
13585424-13585504,13585611-13585673,13585764-13585865,
13586063-13586187,13586316-13586526,13586614-13586688,
13586950-13587003
Length = 445
Score = 45.6 bits (103), Expect = 5e-05
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +3
Query: 108 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGL 251
++ VIV+GTG+ E I++ S G VLHMD +D+YGG S N L
Sbjct: 4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGDSTSLNLNQL 51
Score = 31.9 bits (69), Expect = 0.67
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 425 FNIDTTPKLLFSRGPLVELLISSNIARYL 511
+N+D PK + + G LV LI +++ +YL
Sbjct: 71 YNVDMVPKFMMANGTLVRTLIHTDVTKYL 99
>07_01_1091 -
10015180-10015236,10015705-10015779,10015874-10016149,
10016204-10016332,10017070-10017171,10017626-10017688,
10017776-10017856,10018218-10018314,10019064-10019236,
10019327-10019434,10019706-10019789,10019985-10020047,
10020483-10020569
Length = 464
Score = 42.3 bits (95), Expect = 5e-04
Identities = 21/48 (43%), Positives = 29/48 (60%)
Frame = +3
Query: 108 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGL 251
++ VIV+GTG+ E I++ S VLHMD +D+YGG S N L
Sbjct: 4 EYDVIVLGTGLKECILSGLLSVDRLKVLHMDRNDYYGGDSTSLNLNQL 51
Score = 31.9 bits (69), Expect = 0.67
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 425 FNIDTTPKLLFSRGPLVELLISSNIARYL 511
+N+D PK + + G LV +LI + + +YL
Sbjct: 71 YNVDMIPKFMMANGTLVRVLIHTGVTKYL 99
>12_01_0833 -
7730761-7731030,7731171-7731425,7731565-7731736,
7731873-7732106,7732362-7732495,7734116-7734199,
7735086-7735376,7735566-7735898,7736351-7736424,
7736558-7736653,7736876-7737029,7737118-7737221,
7737325-7737485,7737774-7738087,7738950-7739231,
7739909-7740210,7740513-7740713,7740924-7741014,
7741424-7741500,7741595-7741754,7742026-7742110,
7742194-7742288
Length = 1322
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +2
Query: 245 GPTEFIKEVNSDPDRQKQVYNLSEKWF 325
GP +F++EV S D Q+Q ++ SE+W+
Sbjct: 330 GPADFLQEVLSKKD-QQQYWSRSEQWY 355
>09_04_0425 - 17448906-17449195,17449489-17449600
Length = 133
Score = 28.7 bits (61), Expect = 6.3
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -3
Query: 457 EQQLWSCIDVKFPILRCKIGLAPYFSWF 374
++Q++ C + FP++ L YF WF
Sbjct: 44 QRQMFYCTHLNFPVMLATCSLKSYFLWF 71
>01_03_0233 + 14042548-14044950
Length = 800
Score = 28.7 bits (61), Expect = 6.3
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +1
Query: 619 KRMLMKXLTSIVGYSEEEMNNEFKDW 696
+RML+ + ++ ++E E++ EF DW
Sbjct: 185 RRMLLSLVPAVRAHAEREISREFSDW 210
>10_08_0894 -
21365629-21365766,21365849-21365950,21366042-21366284,
21366685-21366813,21366999-21367103,21367196-21367387,
21367486-21367639,21368148-21368209,21368291-21368437,
21368517-21368564,21369091-21369228,21369305-21369451,
21370579-21370665,21370754-21370861,21370941-21371041,
21371870-21371996,21372820-21372936,21373029-21373106,
21373240-21373284,21373637-21373756,21373838-21373964,
21374033-21374253,21374347-21374529,21374772-21374924,
21375051-21375146,21375226-21375331,21375410-21375492,
21375576-21375728,21375819-21376058,21376367-21376414,
21376782-21376928,21377007-21377115,21377200-21377345,
21377715-21377809,21377944-21378049,21378177-21378368,
21378456-21378686,21378772-21378866,21379426-21379529,
21380040-21380284,21380300-21380347,21380376-21380480,
21380630-21380767,21381458-21381649,21381738-21381914,
21382001-21382129,21382203-21382316,21382407-21382746,
21382836-21383064,21383155-21383455,21384311-21384358,
21387963-21388355
Length = 2493
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 293 KQVYNLSEKWFIEKESAQGET 355
+Q ++ EKW +EK +AQGET
Sbjct: 664 RQSHSNLEKWLVEKLTAQGET 684
>01_03_0044 - 11927272-11928516
Length = 414
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3
Query: 108 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASY 236
DF VIVVG G++ S A A + G L ++ D L +S+
Sbjct: 20 DFDVIVVGAGIMGSCAAHAAASRGARALLLERFDLLHHLGSSH 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,128,062
Number of Sequences: 37544
Number of extensions: 435201
Number of successful extensions: 1193
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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