Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0583
(858 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0) 76 4e-14
SB_30272| Best HMM Match : GDI (HMM E-Value=0) 39 0.005
SB_2490| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.097
SB_30233| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.91
SB_25601| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_47324| Best HMM Match : Lipase_GDSL (HMM E-Value=0.019) 31 1.6
SB_23525| Best HMM Match : Lipase_GDSL (HMM E-Value=0.4) 30 2.8
SB_3941| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8
SB_32101| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_563| Best HMM Match : Ank (HMM E-Value=0) 29 4.8
SB_45116| Best HMM Match : EGF (HMM E-Value=0) 29 4.8
SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0) 29 6.4
SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.4
>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 1024
Score = 75.8 bits (178), Expect = 4e-14
Identities = 31/53 (58%), Positives = 42/53 (79%)
Frame = +3
Query: 93 EDFPTDFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWASYNFEGL 251
EDFPT++ IV+GTG+ E++VAAA SRIG VLH+D +D+Y WAS+ F+GL
Sbjct: 2 EDFPTEYDAIVLGTGLPEAVVAAALSRIGLKVLHLDRNDYYSSQWASFTFDGL 54
Score = 67.7 bits (158), Expect = 1e-11
Identities = 30/84 (35%), Positives = 53/84 (63%)
Frame = +1
Query: 511 EFRCVTRVLTWLNDQLMPVPCSRADVFATEAVGIVEKRMLMKXLTSIVGYSEEEMNNEFK 690
EF+ V ++LT+L + VPCSR+DVF+++ + ++EKR+LMK LT + ++E E+K
Sbjct: 354 EFKAVNQILTFLEGSMEAVPCSRSDVFSSKLIPVIEKRLLMKFLTFCLDHNEH--LEEYK 411
Query: 691 DWNNKXXKGYFTHKGXTPXLHHYI 762
+ +K + + TP L H++
Sbjct: 412 PFEDKPFVEFLKSRRMTPNLQHFV 435
Score = 45.2 bits (102), Expect = 7e-05
Identities = 21/37 (56%), Positives = 26/37 (70%)
Frame = +2
Query: 398 ADFAAEYXKFNIDTTPKLLFSRGPLVELLISSNIARY 508
+D + +FNID PKLL SRG LVE LIS+NI+ Y
Sbjct: 316 SDLEPYHRQFNIDLAPKLLLSRGALVESLISANISHY 352
>SB_30272| Best HMM Match : GDI (HMM E-Value=0)
Length = 1199
Score = 39.1 bits (87), Expect = 0.005
Identities = 17/42 (40%), Positives = 27/42 (64%)
Frame = +3
Query: 108 DFQVIVVGTGMVESIVAAACSRIGKNVLHMDSSDHYGGLWAS 233
++ +V+GTG+ E +++ S K VLHMD + +YGG AS
Sbjct: 4 EYDYVVLGTGLKECVLSGLLSLNKKKVLHMDRNKYYGGDCAS 45
Score = 28.7 bits (61), Expect = 6.4
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 425 FNIDTTPKLLFSRGPLVELLISSNIA 502
+N+D PK L + G LV++L+ + +A
Sbjct: 72 YNVDLIPKFLMADGTLVKILVHTGVA 97
>SB_2490| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 34.7 bits (76), Expect = 0.097
Identities = 18/34 (52%), Positives = 20/34 (58%)
Frame = +3
Query: 132 TGMVESIVAAACSRIGKNVLHMDSSDHYGGLWAS 233
T E I++ A S GK VLHMDS YGG AS
Sbjct: 15 TRRYECILSGALSVAGKKVLHMDSQKFYGGETAS 48
>SB_30233| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 31.5 bits (68), Expect = 0.91
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 111 FQVIVVGTGMVESIVAAACSRIGK-NVLHMDSSDHYGGLW 227
F V V+G G + + A C K +++ + SDH GGLW
Sbjct: 11 FDVAVIGAG-ISGLATAKCLLDDKFSIIVYEQSDHIGGLW 49
>SB_25601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 176
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = -3
Query: 514 TQVARDVRRDQKLDKGPAREQQ---LWSCIDVKFPILRCKIGLAPYF 383
T + RD R ++ + P +QQ +W D FP L+ LA YF
Sbjct: 124 TGLRRDTERSERRARAPPYKQQERTMWGSYDQSFPPLQALNALADYF 170
>SB_47324| Best HMM Match : Lipase_GDSL (HMM E-Value=0.019)
Length = 233
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = -3
Query: 514 TQVARDVRRDQKLDKGPAREQQ---LWSCIDVKFPILRCKIGLAPYF 383
T + RD R ++ + P +QQ +W D FP L+ LA YF
Sbjct: 181 TGLRRDTERSERRARAPPYKQQKRTMWGSYDQSFPPLQALNALADYF 227
>SB_23525| Best HMM Match : Lipase_GDSL (HMM E-Value=0.4)
Length = 187
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = -3
Query: 514 TQVARDVRRDQKLDKGPAREQQ---LWSCIDVKFPILRCKIGLAPYF 383
T + RD R ++ + P +QQ +W D FP L+ LA YF
Sbjct: 135 TGLRRDTERSERRARPPPYKQQKRTMWGSYDQSFPPLQALNALADYF 181
>SB_3941| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 517
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = -3
Query: 514 TQVARDVRRDQKLDKGPAREQQ---LWSCIDVKFPILRCKIGLAPYFS 380
T + RD R ++ + P +QQ +W D FP L+ LA YF+
Sbjct: 465 TGLRRDTERSERRARAPPYKQQKMTMWGSDDQSFPPLQALNALAHYFT 512
>SB_32101| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -3
Query: 418 ILRC--KIGLAPYFSW-FTFVFISCFALCRFLFNK 323
+LRC I A FSW FT F FA C FLF++
Sbjct: 155 VLRCFFVIRFAVLFSWRFTVFFSRRFAFCVFLFSR 189
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -2
Query: 551 SLSQVRTRVTHRNSGSARCSKRSEARQGARERT 453
SLS+ R+R R G R RS +R+G R+R+
Sbjct: 703 SLSRSRSRSRSRGRGRRRSRSRSSSRKGKRQRS 735
>SB_563| Best HMM Match : Ank (HMM E-Value=0)
Length = 753
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 401 RLGSILFLVHLCFHQLFRLVQIPFQ 327
RLGSI+ L+ C+H L L Q+ +Q
Sbjct: 623 RLGSIIILILACWHILMELFQMVYQ 647
>SB_45116| Best HMM Match : EGF (HMM E-Value=0)
Length = 2023
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = -1
Query: 471 RGPRENNSFGVVSMLNFXYSAAKSAWLHTFLGSPLFSSVVSPCADS 334
RG + N+ GV + ++ A + WL+ L SP F+++V+ CA +
Sbjct: 86 RGDCQLNAKGVENEISDDL-ATREGWLYVQLRSPQFTTLVNACASN 130
>SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)
Length = 2726
Score = 28.7 bits (61), Expect = 6.4
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = -1
Query: 417 YSAAKSAWLHTFLGSPLFSSVVSPCADSFSINHFSDKLYTCFCLSGSLFTSFMNSVGPQN 238
YS+ S+ TFL SP +S+ P S H +L + S +L TS +++ P +
Sbjct: 969 YSSPPSSSQSTFLSSPSSTSLQQPSPSSQP--HSEPRLPSPSLESSTLQTSQLSNDSPNS 1026
Query: 237 YMKPR 223
Y P+
Sbjct: 1027 YTAPQ 1031
>SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1434
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 487 DQKLDKGPAREQQLWSCIDVKFPILRCKIGLAP 389
D+ L PA+E+ SC D+ + C+I L P
Sbjct: 206 DEHLSDAPAKEEYATSCSDLNIAGINCRIILHP 238
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,274,399
Number of Sequences: 59808
Number of extensions: 492631
Number of successful extensions: 1348
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1347
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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